Gene annotation
Transcriptome id Sobic.003G015100.1
Synonym Gretchen Hagen3, SbGH3-6, Sb03g001500, FIN219, JAR1
Functional annotation "domain confirmed by Pfam database, expression induced by IAA and BR treatments" (PubMedID : 20499123)
OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed
UniProt A0A1W0VVC7
Pfam PF03321
Panther DB PTHR31901 PTHR31901:SF13
NCBI CDD -
KEGG Orthology K14487; auxin responsive GH3 gene family
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46370 : Auxin-responsive GH3 family protein
RAP-DB (Rice) LOC_Os01g12160.1 : OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed
MaizeGDB (Corn) Zm00025a022882 , Zm00025a035943
Brachypodium KQK03340
Barley HORVU3Hr1G029670.7 , HORVU3Hr1G029670.6 , HORVU3Hr1G029670.5 , HORVU3Hr1G029670.4 , HORVU3Hr1G029670.3 , HORVU3Hr1G029670.2 , HORVU3Hr1G029670.1 , HORVU3Hr1G029670.8 , HORVU3Hr1G029670.13 , HORVU3Hr1G029670.10 , HORVU3Hr1G029670.9
Wheat TraesCS3A02G145300 , TraesCS3B02G172400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G184500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR55 - Auxin-responsive SAUR gene family member, expressed -
2 Sobic.007G089533 - -
3 Sobic.002G079801 - -
4 Sobic.008G044750 - -
5 Sobic.010G101700 - -
6 Sobic.007G005000 expressed protein -
7 Sobic.003G429500 - -
8 Sobic.003G198150 - -
9 Sobic.003G361300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
10 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
11 Sobic.006G249200 expressed protein -
12 Sobic.002G171400 - -
13 Sobic.003G079800 Ser/Thr protein kinase, putative, expressed -
14 Sobic.010G092600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
15 Sobic.007G051600 - -
16 Sobic.004G331300 AP2 domain containing protein, expressed -
17 Sobic.005G079700 expressed protein -
18 Sobic.001G523100 - -
19 Sobic.003G161700 expressed protein -
20 Sobic.004G245900 - -


Gene co-expression network
sample Sobic003G015100 Sobic003G015100 Sobic001G184500 Sobic001G184500 Sobic003G015100--Sobic001G184500 Sobic007G089533 Sobic007G089533 Sobic003G015100--Sobic007G089533 Sobic002G079801 Sobic002G079801 Sobic003G015100--Sobic002G079801 Sobic008G044750 Sobic008G044750 Sobic003G015100--Sobic008G044750 Sobic010G101700 Sobic010G101700 Sobic003G015100--Sobic010G101700 Sobic007G005000 Sobic007G005000 Sobic003G015100--Sobic007G005000 Sobic003G429500 Sobic003G429500 Sobic003G015100--Sobic003G429500 Sobic003G198150 Sobic003G198150 Sobic003G015100--Sobic003G198150 Sobic003G361300 Sobic003G361300 Sobic003G015100--Sobic003G361300 Sobic001G184500--Sobic010G101700 Sobic001G184500--Sobic002G079801 Sobic001G184500--Sobic003G015100 Sobic008G052500 Sobic008G052500 Sobic001G184500--Sobic008G052500 Sobic008G065400 Sobic008G065400 Sobic001G184500--Sobic008G065400 Sobic001G278600 Sobic001G278600 Sobic001G184500--Sobic001G278600 Sobic001G184500--Sobic007G005000 Sobic003G266700 Sobic003G266700 Sobic001G184500--Sobic003G266700 Sobic002G171400 Sobic002G171400 Sobic001G184500--Sobic002G171400 Sobic004G331300 Sobic004G331300 Sobic007G089533--Sobic004G331300 Sobic009G000700 Sobic009G000700 Sobic007G089533--Sobic009G000700 Sobic007G051600 Sobic007G051600 Sobic007G089533--Sobic007G051600 Sobic004G310600 Sobic004G310600 Sobic007G089533--Sobic004G310600 Sobic007G089533--Sobic003G015100 Sobic004G155150 Sobic004G155150 Sobic007G089533--Sobic004G155150 Sobic009G253950 Sobic009G253950 Sobic007G089533--Sobic009G253950 Sobic010G006700 Sobic010G006700 Sobic007G089533--Sobic010G006700 Sobic001G159850 Sobic001G159850 Sobic007G089533--Sobic001G159850 Sobic003G079800 Sobic003G079800 Sobic002G079801--Sobic003G079800 Sobic002G079801--Sobic008G044750 Sobic002G079801--Sobic001G184500 Sobic002G079801--Sobic003G198150 Sobic009G183000 Sobic009G183000 Sobic002G079801--Sobic009G183000 Sobic001G140200 Sobic001G140200 Sobic002G079801--Sobic001G140200 Sobic009G128300 Sobic009G128300 Sobic002G079801--Sobic009G128300 Sobic002G079801--Sobic010G101700 Sobic001G509400 Sobic001G509400 Sobic002G079801--Sobic001G509400 Sobic008G044750--Sobic001G509400 Sobic008G044750--Sobic009G128300 Sobic008G044750--Sobic003G079800 Sobic002G182800 Sobic002G182800 Sobic008G044750--Sobic002G182800 Sobic003G233900 Sobic003G233900 Sobic008G044750--Sobic003G233900 Sobic003G227600 Sobic003G227600 Sobic008G044750--Sobic003G227600 Sobic008G044750--Sobic003G198150 Sobic003G066900 Sobic003G066900 Sobic008G044750--Sobic003G066900 Sobic001G075101 Sobic001G075101 Sobic008G044750--Sobic001G075101 Sobic010G101700--Sobic001G184500 Sobic010G101700--Sobic001G278600 Sobic003G351150 Sobic003G351150 Sobic010G101700--Sobic003G351150 Sobic009G157500 Sobic009G157500 Sobic010G101700--Sobic009G157500 Sobic010G101700--Sobic003G266700 Sobic010G101700--Sobic008G065400 Sobic010G101700--Sobic002G079801 Sobic002G224450 Sobic002G224450 Sobic010G101700--Sobic002G224450 Sobic010G101700--Sobic007G005000 Sobic008G045600 Sobic008G045600 Sobic007G005000--Sobic008G045600 Sobic009G159500 Sobic009G159500 Sobic007G005000--Sobic009G159500 Sobic007G005000--Sobic003G429500 Sobic008G106400 Sobic008G106400 Sobic007G005000--Sobic008G106400 Sobic005G043800 Sobic005G043800 Sobic007G005000--Sobic005G043800 Sobic001G261480 Sobic001G261480 Sobic007G005000--Sobic001G261480 Sobic007G005000--Sobic001G184500 Sobic007G005000--Sobic010G101700 Sobic003G161700 Sobic003G161700 Sobic007G005000--Sobic003G161700 Sobic003G366850 Sobic003G366850 Sobic003G429500--Sobic003G366850 Sobic003G429500--Sobic008G065400 Sobic003G429500--Sobic002G171400 Sobic002G431200 Sobic002G431200 Sobic003G429500--Sobic002G431200 Sobic005G043100 Sobic005G043100 Sobic003G429500--Sobic005G043100 Sobic003G429500--Sobic001G261480 Sobic003G429500--Sobic003G266700 Sobic003G429500--Sobic007G005000 Sobic003G429500--Sobic008G045600 Sobic003G198150--Sobic008G044750 Sobic003G198200 Sobic003G198200 Sobic003G198150--Sobic003G198200 Sobic003G198150--Sobic009G128300 Sobic003G198150--Sobic001G509400 Sobic003G198150--Sobic003G079800 Sobic003G198150--Sobic003G227600 Sobic004G170032 Sobic004G170032 Sobic003G198150--Sobic004G170032 Sobic003G198150--Sobic003G233900 Sobic001G450800 Sobic001G450800 Sobic003G198150--Sobic001G450800 Sobic003G361300--Sobic001G450800 Sobic001G430700 Sobic001G430700 Sobic003G361300--Sobic001G430700 Sobic003G361300--Sobic003G198150 Sobic003G361300--Sobic008G044750 Sobic003G361300--Sobic003G227600 Sobic003G040800 Sobic003G040800 Sobic003G361300--Sobic003G040800 Sobic009G216900 Sobic009G216900 Sobic003G361300--Sobic009G216900 Sobic003G361300--Sobic003G233900 Sobic003G361300--Sobic009G128300
Octagon: transcription factors


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