Gene annotation
Transcriptome id Sobic.003G028600.2
Synonym Sb03g002690
Functional annotation phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
UniProt C5XLT6
Pfam PF13535 PF00731
Panther DB PTHR11609 PTHR11609:SF5
NCBI CDD KOG2835; Phosphoribosylamidoimidazole-succinocarboxamide synthase
KEGG Orthology K11808; phosphoribosylaminoimidazole carboxylase
Gene Ontology GO:0006189; 'de novo' IMP biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G37690 : phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative
RAP-DB (Rice) LOC_Os01g10280.2 : phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a022969
Brachypodium KQK03189 , KQK03188
Barley HORVU3Hr1G027070.11 , HORVU3Hr1G027070.10 , HORVU3Hr1G027070.3 , HORVU3Hr1G027070.9 , HORVU3Hr1G027070.8 , HORVU3Hr1G027070.2 , HORVU3Hr1G027070.1 , HORVU3Hr1G027070.7 , HORVU3Hr1G027070.6 , HORVU3Hr1G027070.5 , HORVU3Hr1G027070.4
Wheat TraesCS3A02G312300 , TraesCS3D02G142100 , TraesCS3A02G312300 , TraesCS3B02G159900 , TraesCS3A02G312300 , TraesCS3B02G159900
Populus -


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cDNA sequences
Sobic.003G028600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G225800 white-brown complex homolog protein 11, putative, expressed -
2 Sobic.006G105400 expressed protein -
3 Sobic.001G035900 expressed protein K13156: U11/U12 small nuclear ribonucleoprotein 48 kDa protein
4 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
5 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
6 Sobic.004G258700 PHD-finger family protein, expressed -
7 Sobic.006G274600 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7
8 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
9 Sobic.001G028100 - -
10 Sobic.003G057233 - -
11 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
12 Sobic.002G173000 disease resistance protein RGA2, putative, expressed -
13 Sobic.005G154850 - K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
14 Sobic.009G009100 - -
15 Sobic.003G171200 caffeine-induced death protein 1, putative, expressed -
16 Sobic.007G074600 tetratricopeptide repeat domain containing protein, expressed K15201: GTP3C3, general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
17 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
18 Sobic.006G234601 - -
19 Sobic.004G164400 expressed protein -
20 Sobic.001G094600 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G028600 Sobic003G028600 Sobic005G225800 Sobic005G225800 Sobic003G028600--Sobic005G225800 Sobic006G105400 Sobic006G105400 Sobic003G028600--Sobic006G105400 Sobic001G035900 Sobic001G035900 Sobic003G028600--Sobic001G035900 Sobic007G161000 Sobic007G161000 Sobic003G028600--Sobic007G161000 Sobic007G185700 Sobic007G185700 Sobic003G028600--Sobic007G185700 Sobic004G258700 Sobic004G258700 Sobic003G028600--Sobic004G258700 Sobic006G274600 Sobic006G274600 Sobic003G028600--Sobic006G274600 Sobic004G035000 Sobic004G035000 Sobic003G028600--Sobic004G035000 Sobic001G028100 Sobic001G028100 Sobic003G028600--Sobic001G028100 Sobic005G039500 Sobic005G039500 Sobic005G225800--Sobic005G039500 Sobic005G225800--Sobic001G035900 Sobic010G248700 Sobic010G248700 Sobic005G225800--Sobic010G248700 Sobic002G173000 Sobic002G173000 Sobic005G225800--Sobic002G173000 Sobic005G225800--Sobic004G035000 Sobic003G254000 Sobic003G254000 Sobic005G225800--Sobic003G254000 Sobic010G176550 Sobic010G176550 Sobic005G225800--Sobic010G176550 Sobic002G006600 Sobic002G006600 Sobic005G225800--Sobic002G006600 Sobic001G214300 Sobic001G214300 Sobic005G225800--Sobic001G214300 Sobic006G105400--Sobic001G214300 Sobic006G048600 Sobic006G048600 Sobic006G105400--Sobic006G048600 Sobic006G048500 Sobic006G048500 Sobic006G105400--Sobic006G048500 Sobic006G182900 Sobic006G182900 Sobic006G105400--Sobic006G182900 Sobic004G007100 Sobic004G007100 Sobic006G105400--Sobic004G007100 Sobic006G105400--Sobic007G161000 Sobic001G365900 Sobic001G365900 Sobic006G105400--Sobic001G365900 Sobic010G255700 Sobic010G255700 Sobic006G105400--Sobic010G255700 Sobic004G341900 Sobic004G341900 Sobic006G105400--Sobic004G341900 Sobic001G035900--Sobic003G254000 Sobic002G031400 Sobic002G031400 Sobic001G035900--Sobic002G031400 Sobic002G064750 Sobic002G064750 Sobic001G035900--Sobic002G064750 Sobic007G099100 Sobic007G099100 Sobic001G035900--Sobic007G099100 Sobic001G274200 Sobic001G274200 Sobic001G035900--Sobic001G274200 Sobic003G429650 Sobic003G429650 Sobic001G035900--Sobic003G429650 Sobic001G035900--Sobic010G176550 Sobic001G035900--Sobic007G161000 Sobic009G024000 Sobic009G024000 Sobic001G035900--Sobic009G024000 Sobic004G039200 Sobic004G039200 Sobic007G161000--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic007G161000--Sobic007G117400 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic007G161000--Sobic006G182900 Sobic002G309600 Sobic002G309600 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic008G028700 Sobic008G028700 Sobic007G161000--Sobic008G028700 Sobic001G054100 Sobic001G054100 Sobic007G185700--Sobic001G054100 Sobic003G234900 Sobic003G234900 Sobic007G185700--Sobic003G234900 Sobic003G141100 Sobic003G141100 Sobic007G185700--Sobic003G141100 Sobic001G500600 Sobic001G500600 Sobic007G185700--Sobic001G500600 Sobic003G217700 Sobic003G217700 Sobic007G185700--Sobic003G217700 Sobic001G530900 Sobic001G530900 Sobic007G185700--Sobic001G530900 Sobic003G352500 Sobic003G352500 Sobic007G185700--Sobic003G352500 Sobic001G261573 Sobic001G261573 Sobic007G185700--Sobic001G261573 Sobic005G231100 Sobic005G231100 Sobic007G185700--Sobic005G231100 Sobic008G113100 Sobic008G113100 Sobic004G258700--Sobic008G113100 Sobic004G258700--Sobic008G028700 Sobic001G456900 Sobic001G456900 Sobic004G258700--Sobic001G456900 Sobic003G148000 Sobic003G148000 Sobic004G258700--Sobic003G148000 Sobic003G101500 Sobic003G101500 Sobic004G258700--Sobic003G101500 Sobic010G277500 Sobic010G277500 Sobic004G258700--Sobic010G277500 Sobic007G065400 Sobic007G065400 Sobic004G258700--Sobic007G065400 Sobic004G258700--Sobic007G161000 Sobic009G040600 Sobic009G040600 Sobic004G258700--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic006G274600--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic006G274600--Sobic009G065100 Sobic004G164400 Sobic004G164400 Sobic006G274600--Sobic004G164400 Sobic006G274600--Sobic010G255700 Sobic006G274600--Sobic004G039200 Sobic004G084300 Sobic004G084300 Sobic006G274600--Sobic004G084300 Sobic006G274600--Sobic007G161000 Sobic006G274600--Sobic006G105400 Sobic002G320500 Sobic002G320500 Sobic006G274600--Sobic002G320500 Sobic004G035000--Sobic003G254000 Sobic007G076700 Sobic007G076700 Sobic004G035000--Sobic007G076700 Sobic004G142700 Sobic004G142700 Sobic004G035000--Sobic004G142700 Sobic009G212700 Sobic009G212700 Sobic004G035000--Sobic009G212700 Sobic004G035000--Sobic005G039500 Sobic004G035000--Sobic001G035900 Sobic002G114700 Sobic002G114700 Sobic004G035000--Sobic002G114700 Sobic004G035000--Sobic002G031400 Sobic004G035000--Sobic005G225800 Sobic001G028100--Sobic001G054100 Sobic006G270200 Sobic006G270200 Sobic001G028100--Sobic006G270200 Sobic001G028100--Sobic003G352500 Sobic002G181000 Sobic002G181000 Sobic001G028100--Sobic002G181000 Sobic001G028100--Sobic007G185700 Sobic010G002000 Sobic010G002000 Sobic001G028100--Sobic010G002000 Sobic008G039600 Sobic008G039600 Sobic001G028100--Sobic008G039600 Sobic003G232700 Sobic003G232700 Sobic001G028100--Sobic003G232700 Sobic002G043600 Sobic002G043600 Sobic001G028100--Sobic002G043600
Octagon: transcription factors


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