Gene annotation
Transcriptome id Sobic.003G056400.1
Synonym Sb03g004820
Functional annotation expressed protein
UniProt C5XNJ2
Pfam PF03478
Panther DB PTHR33127 PTHR33127:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G24250 : Protein of unknown function (DUF295)
RAP-DB (Rice) LOC_Os01g66260.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G191800 single-stranded DNA-binding protein, putative, expressed -
2 Sobic.009G031700 expressed protein -
3 Sobic.004G013500 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00963: UGP2, galU, UTP--glucose-1-phosphate uridylyltransferase
4 Sobic.002G254600 expressed protein -
5 Sobic.010G114500 tetraspanin family protein, putative, expressed -
6 Sobic.006G162700 - -
7 Sobic.004G188201 - -
8 Sobic.006G178700 expressed protein -
9 Sobic.009G031100 cycloeucalenol cycloisomerase, putative, expressed K08246: cycloeucalenol cycloisomerase
10 Sobic.008G028500 expressed protein -
11 Sobic.006G187600 DUF623 domain containing protein, expressed -
12 Sobic.001G441800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
13 Sobic.003G105300 - -
14 Sobic.001G407000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ proteins of unknown function domain containing protein, putative, expressed -
15 Sobic.010G040000 expressed protein -
16 Sobic.007G001300 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
17 Sobic.008G020300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.002G425900 expressed protein -
19 Sobic.010G224800 patellin-5, putative, expressed -
20 Sobic.003G092200 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B


Gene co-expression network
sample Sobic003G056400 Sobic003G056400 Sobic009G191800 Sobic009G191800 Sobic003G056400--Sobic009G191800 Sobic009G031700 Sobic009G031700 Sobic003G056400--Sobic009G031700 Sobic004G013500 Sobic004G013500 Sobic003G056400--Sobic004G013500 Sobic002G254600 Sobic002G254600 Sobic003G056400--Sobic002G254600 Sobic010G114500 Sobic010G114500 Sobic003G056400--Sobic010G114500 Sobic006G162700 Sobic006G162700 Sobic003G056400--Sobic006G162700 Sobic004G188201 Sobic004G188201 Sobic003G056400--Sobic004G188201 Sobic006G178700 Sobic006G178700 Sobic003G056400--Sobic006G178700 Sobic009G031100 Sobic009G031100 Sobic003G056400--Sobic009G031100 Sobic001G441800 Sobic001G441800 Sobic009G191800--Sobic001G441800 Sobic009G191800--Sobic004G013500 Sobic001G130900 Sobic001G130900 Sobic009G191800--Sobic001G130900 Sobic007G149600 Sobic007G149600 Sobic009G191800--Sobic007G149600 Sobic009G191800--Sobic010G114500 Sobic003G350100 Sobic003G350100 Sobic009G191800--Sobic003G350100 Sobic007G122300 Sobic007G122300 Sobic009G191800--Sobic007G122300 Sobic002G276700 Sobic002G276700 Sobic009G191800--Sobic002G276700 Sobic004G265400 Sobic004G265400 Sobic009G191800--Sobic004G265400 Sobic009G031700--Sobic004G188201 Sobic009G031700--Sobic004G013500 Sobic009G031700--Sobic010G114500 Sobic009G031700--Sobic006G178700 Sobic009G031700--Sobic003G056400 Sobic010G040000 Sobic010G040000 Sobic009G031700--Sobic010G040000 Sobic009G031700--Sobic009G191800 Sobic010G200800 Sobic010G200800 Sobic009G031700--Sobic010G200800 Sobic009G031700--Sobic009G031100 Sobic004G013500--Sobic009G191800 Sobic004G013500--Sobic009G031700 Sobic004G013500--Sobic004G188201 Sobic004G013500--Sobic003G056400 Sobic004G013500--Sobic010G114500 Sobic004G013500--Sobic002G254600 Sobic004G013500--Sobic001G441800 Sobic004G013500--Sobic003G350100 Sobic001G193400 Sobic001G193400 Sobic004G013500--Sobic001G193400 Sobic002G254600--Sobic003G056400 Sobic002G254600--Sobic009G191800 Sobic002G254600--Sobic004G013500 Sobic002G254600--Sobic009G031700 Sobic010G189800 Sobic010G189800 Sobic002G254600--Sobic010G189800 Sobic002G254600--Sobic010G114500 Sobic002G254600--Sobic004G188201 Sobic002G254600--Sobic002G276700 Sobic002G254600--Sobic001G441800 Sobic010G114500--Sobic009G031100 Sobic007G001300 Sobic007G001300 Sobic010G114500--Sobic007G001300 Sobic002G156300 Sobic002G156300 Sobic010G114500--Sobic002G156300 Sobic003G109400 Sobic003G109400 Sobic010G114500--Sobic003G109400 Sobic010G224800 Sobic010G224800 Sobic010G114500--Sobic010G224800 Sobic010G114400 Sobic010G114400 Sobic010G114500--Sobic010G114400 Sobic003G105300 Sobic003G105300 Sobic010G114500--Sobic003G105300 Sobic004G197300 Sobic004G197300 Sobic010G114500--Sobic004G197300 Sobic009G163500 Sobic009G163500 Sobic010G114500--Sobic009G163500 Sobic004G330400 Sobic004G330400 Sobic006G162700--Sobic004G330400 Sobic006G162700--Sobic010G114500 Sobic008G028500 Sobic008G028500 Sobic006G162700--Sobic008G028500 Sobic006G162700--Sobic009G031100 Sobic006G162700--Sobic010G224800 Sobic006G162700--Sobic003G105300 Sobic006G162700--Sobic007G001300 Sobic002G284800 Sobic002G284800 Sobic006G162700--Sobic002G284800 Sobic006G162700--Sobic003G109400 Sobic004G188201--Sobic009G031700 Sobic004G188201--Sobic004G013500 Sobic004G188201--Sobic003G056400 Sobic001G536200 Sobic001G536200 Sobic004G188201--Sobic001G536200 Sobic010G096500 Sobic010G096500 Sobic004G188201--Sobic010G096500 Sobic004G188201--Sobic006G178700 Sobic006G218100 Sobic006G218100 Sobic004G188201--Sobic006G218100 Sobic003G270700 Sobic003G270700 Sobic004G188201--Sobic003G270700 Sobic010G266100 Sobic010G266100 Sobic004G188201--Sobic010G266100 Sobic006G178700--Sobic010G040000 Sobic001G000900 Sobic001G000900 Sobic006G178700--Sobic001G000900 Sobic004G279150 Sobic004G279150 Sobic006G178700--Sobic004G279150 Sobic006G178700--Sobic010G114500 Sobic006G167200 Sobic006G167200 Sobic006G178700--Sobic006G167200 Sobic008G088863 Sobic008G088863 Sobic006G178700--Sobic008G088863 Sobic009G127600 Sobic009G127600 Sobic006G178700--Sobic009G127600 Sobic002G188100 Sobic002G188100 Sobic006G178700--Sobic002G188100 Sobic003G294000 Sobic003G294000 Sobic006G178700--Sobic003G294000 Sobic009G031100--Sobic002G156300 Sobic009G031100--Sobic007G001300 Sobic009G031100--Sobic010G224800 Sobic009G031100--Sobic010G114400 Sobic009G031100--Sobic003G109400 Sobic009G031100--Sobic010G114500 Sobic009G031100--Sobic003G105300 Sobic002G206200 Sobic002G206200 Sobic009G031100--Sobic002G206200 Sobic009G031100--Sobic004G197300
Octagon: transcription factors


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