Gene annotation
Transcriptome id Sobic.003G056600.1
Synonym Sb03g004840
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt -
Pfam PF15511
Panther DB PTHR10484
NCBI CDD KOG3467; Histone H4
KEGG Orthology K11254; histone H4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G59970 : Histone superfamily protein
RAP-DB (Rice) LOC_Os09g38020.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026958 , Zm00025a000277 , Zm00025a048010 , Zm00025a023329 , Zm00025a013952 , Zm00025a056690 , Zm00025a010063 , Zm00025a047950 , Zm00025a037747 , Zm00025a032342 , Zm00025a047110 , Zm00025a035684 , Zm00025a039706
Brachypodium KQJ86516 , KQK12788 , KQK05829 , KQJ90348 , PNT61710 , KQK05861 , KQJ84202 , PNT69244 , PNT73988
Barley HORVU6Hr1G066400.1 , HORVU6Hr1G066400.2 , HORVU6Hr1G066400.3 , HORVU7Hr1G100410.1 , HORVU6Hr1G011020.4 , HORVU6Hr1G011020.5 , HORVU1Hr1G071760.1 , HORVU6Hr1G011020.1 , HORVU6Hr1G011020.2 , HORVU6Hr1G011020.3 , HORVU2Hr1G098340.4 , HORVU2Hr1G098340.2 , HORVU2Hr1G098340.3 , HORVU2Hr1G098340.1 , HORVU1Hr1G090300.5 , HORVU1Hr1G090300.4 , HORVU1Hr1G090300.7 , HORVU1Hr1G090300.6 , HORVU1Hr1G090300.1 , HORVU1Hr1G090300.3 , HORVU1Hr1G090300.2 , HORVU1Hr1G090300.9 , HORVU1Hr1G090300.8 , HORVU1Hr1G090300.46 , HORVU1Hr1G090300.47 , HORVU1Hr1G080200.3 , HORVU1Hr1G090300.45 , HORVU1Hr1G029090.1 , HORVU1Hr1G029090.2 , HORVU5Hr1G086620.1 , HORVU2Hr1G099490.1 , HORVU5Hr1G086620.3 , HORVU5Hr1G086620.2 , HORVU5Hr1G086620.5 , HORVU5Hr1G086620.4 , HORVU5Hr1G086620.6 , HORVU2Hr1G098320.1 , HORVU1Hr1G071760.2 , HORVU2Hr1G099490.2 , HORVU1Hr1G071760.3 , HORVU3Hr1G088160.2 , HORVU3Hr1G088160.1 , HORVU1Hr1G071190.2 , HORVU1Hr1G079440.2 , HORVU1Hr1G079440.1 , HORVU2Hr1G099490.3 , HORVU1Hr1G071190.1 , HORVU1Hr1G071190.3 , HORVU1Hr1G066960.1 , HORVU1Hr1G052030.1 , HORVU1Hr1G071780.44 , HORVU1Hr1G090300.11 , HORVU1Hr1G090300.10 , HORVU1Hr1G020060.1 , HORVU1Hr1G090300.12 , HORVU6Hr1G029210.1 , HORVU6Hr1G029210.2 , HORVU6Hr1G029210.3 , HORVU4Hr1G063260.1 , HORVU2Hr1G106590.1 , HORVU4Hr1G063260.2 , HORVU1Hr1G090300.42 , HORVU1Hr1G090300.43 , HORVU1Hr1G090300.40 , HORVU1Hr1G090300.41 , HORVU1Hr1G080200.1 , HORVU6Hr1G011510.1 , HORVU6Hr1G011510.2 , HORVU1Hr1G080200.2 , HORVU1Hr1G090300.19 , HORVU1Hr1G090300.18 , HORVU1Hr1G090300.24 , HORVU1Hr1G090300.25 , HORVU2Hr1G097990.2 , HORVU1Hr1G090300.44 , HORVU2Hr1G097990.1 , HORVU1Hr1G090300.26 , HORVU1Hr1G090300.39 , HORVU1Hr1G090300.38 , HORVU1Hr1G090300.37 , HORVU1Hr1G090300.36 , HORVU1Hr1G090300.35 , HORVU1Hr1G090300.34 , HORVU1Hr1G090300.33 , HORVU1Hr1G090300.32 , HORVU1Hr1G090300.31 , HORVU1Hr1G090300.30 , HORVU1Hr1G070700.3 , HORVU1Hr1G052030.2 , HORVU1Hr1G071210.2 , HORVU1Hr1G071210.3 , HORVU1Hr1G071210.1 , HORVU1Hr1G070700.2 , HORVU1Hr1G071210.4 , HORVU1Hr1G071210.5 , HORVU1Hr1G017830.1 , HORVU3Hr1G023460.1 , HORVU3Hr1G023460.2 , HORVU1Hr1G070700.1 , HORVU1Hr1G090300.28 , HORVU1Hr1G090300.29 , HORVU5Hr1G087870.3 , HORVU5Hr1G087870.2 , HORVU5Hr1G087870.1 , HORVU1Hr1G090300.27 , HORVU1Hr1G090300.20 , HORVU1Hr1G090300.21 , HORVU1Hr1G090300.22 , HORVU1Hr1G090300.23 , HORVU7Hr1G043300.1 , HORVU1Hr1G073680.1 , HORVU6Hr1G011710.1 , HORVU5Hr1G087830.1 , HORVU2Hr1G093680.4 , HORVU2Hr1G093680.2 , HORVU2Hr1G093680.3 , HORVU2Hr1G093680.1 , HORVU4Hr1G023200.3 , HORVU3Hr1G087170.1 , HORVU4Hr1G023200.2 , HORVU6Hr1G011780.1 , HORVU6Hr1G013530.1 , HORVU1Hr1G090300.13 , HORVU6Hr1G011780.2 , HORVU1Hr1G090300.15 , HORVU1Hr1G090300.14 , HORVU1Hr1G090300.17 , HORVU1Hr1G090300.16 , HORVU5Hr1G086630.2 , HORVU5Hr1G086630.3 , HORVU5Hr1G086630.1 , HORVU5Hr1G086630.6 , HORVU5Hr1G086630.7 , HORVU5Hr1G086630.4 , HORVU5Hr1G086630.5 , HORVU6Hr1G011540.2 , HORVU6Hr1G011540.1 , HORVU1Hr1G022390.2 , HORVU1Hr1G022390.1 , HORVU5Hr1G079130.2 , HORVU5Hr1G079130.1 , HORVU7Hr1G114720.1 , HORVU4Hr1G023200.1 , HORVU1Hr1G020040.1 , HORVU1Hr1G020040.2
Wheat TraesCS2D02G415000 , TraesCS7A02G408100 , TraesCS6B02G072500 , TraesCS2A02G203000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G043150 - -
2 Sobic.006G129600 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.003G000700 DNA binding protein, putative, expressed -
4 Sobic.002G226500 "SG1(Ortholog in rice:Nakagawa et al., 2012)"(PubMedID : 31659856)@expressed protein -
5 Sobic.010G159100 DUF538 domain containing protein, putative, expressed -
6 Sobic.002G247800 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL17 - SBP-box gene family member, expressed -
7 Sobic.010G222400 MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.010G091600 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
9 Sobic.002G179150 - -
10 Sobic.004G217450 - -
11 Sobic.006G030200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.005G004700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
13 Sobic.007G158000 expressed protein -
14 Sobic.008G135600 osmotin, putative, expressed -
15 Sobic.010G222501 - K10523: speckle-type POZ protein
16 Sobic.006G119000 X8 domain containing protein, expressed -
17 Sobic.002G375701 - -
18 Sobic.002G254300 expressed protein -
19 Sobic.002G129100 LTPL27 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
20 Sobic.001G310200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic003G056600 Sobic003G056600 Sobic003G043150 Sobic003G043150 Sobic003G056600--Sobic003G043150 Sobic006G129600 Sobic006G129600 Sobic003G056600--Sobic006G129600 Sobic003G000700 Sobic003G000700 Sobic003G056600--Sobic003G000700 Sobic002G226500 Sobic002G226500 Sobic003G056600--Sobic002G226500 Sobic010G159100 Sobic010G159100 Sobic003G056600--Sobic010G159100 Sobic002G247800 Sobic002G247800 Sobic003G056600--Sobic002G247800 Sobic010G222400 Sobic010G222400 Sobic003G056600--Sobic010G222400 Sobic010G091600 Sobic010G091600 Sobic003G056600--Sobic010G091600 Sobic002G179150 Sobic002G179150 Sobic003G056600--Sobic002G179150 Sobic003G043150--Sobic003G056600 Sobic001G327900 Sobic001G327900 Sobic003G043150--Sobic001G327900 Sobic003G043150--Sobic002G226500 Sobic002G225200 Sobic002G225200 Sobic003G043150--Sobic002G225200 Sobic001G305300 Sobic001G305300 Sobic003G043150--Sobic001G305300 Sobic002G008600 Sobic002G008600 Sobic003G043150--Sobic002G008600 Sobic002G222700 Sobic002G222700 Sobic003G043150--Sobic002G222700 Sobic001G310900 Sobic001G310900 Sobic003G043150--Sobic001G310900 Sobic002G016400 Sobic002G016400 Sobic003G043150--Sobic002G016400 Sobic010G167200 Sobic010G167200 Sobic006G129600--Sobic010G167200 Sobic010G062200 Sobic010G062200 Sobic006G129600--Sobic010G062200 Sobic006G129600--Sobic003G000700 Sobic001G110100 Sobic001G110100 Sobic006G129600--Sobic001G110100 Sobic006G127750 Sobic006G127750 Sobic006G129600--Sobic006G127750 Sobic009G074900 Sobic009G074900 Sobic006G129600--Sobic009G074900 Sobic010G048200 Sobic010G048200 Sobic006G129600--Sobic010G048200 Sobic010G259400 Sobic010G259400 Sobic006G129600--Sobic010G259400 Sobic009G075000 Sobic009G075000 Sobic006G129600--Sobic009G075000 Sobic003G000700--Sobic006G129600 Sobic003G000700--Sobic010G167200 Sobic006G059300 Sobic006G059300 Sobic003G000700--Sobic006G059300 Sobic003G000700--Sobic006G127750 Sobic003G000700--Sobic001G110100 Sobic001G310200 Sobic001G310200 Sobic003G000700--Sobic001G310200 Sobic010G226300 Sobic010G226300 Sobic003G000700--Sobic010G226300 Sobic003G000700--Sobic010G062200 Sobic002G035000 Sobic002G035000 Sobic003G000700--Sobic002G035000 Sobic006G030200 Sobic006G030200 Sobic002G226500--Sobic006G030200 Sobic008G113900 Sobic008G113900 Sobic002G226500--Sobic008G113900 Sobic007G225400 Sobic007G225400 Sobic002G226500--Sobic007G225400 Sobic010G022500 Sobic010G022500 Sobic002G226500--Sobic010G022500 Sobic002G278200 Sobic002G278200 Sobic002G226500--Sobic002G278200 Sobic006G149300 Sobic006G149300 Sobic002G226500--Sobic006G149300 Sobic006G119000 Sobic006G119000 Sobic002G226500--Sobic006G119000 Sobic003G052900 Sobic003G052900 Sobic002G226500--Sobic003G052900 Sobic004G030300 Sobic004G030300 Sobic002G226500--Sobic004G030300 Sobic002G241500 Sobic002G241500 Sobic010G159100--Sobic002G241500 Sobic010G001800 Sobic010G001800 Sobic010G159100--Sobic010G001800 Sobic010G159100--Sobic002G247800 Sobic004G285900 Sobic004G285900 Sobic010G159100--Sobic004G285900 Sobic001G389300 Sobic001G389300 Sobic010G159100--Sobic001G389300 Sobic001G108400 Sobic001G108400 Sobic010G159100--Sobic001G108400 Sobic010G159100--Sobic007G225400 Sobic007G214700 Sobic007G214700 Sobic010G159100--Sobic007G214700 Sobic010G159100--Sobic002G179150 Sobic002G247800--Sobic007G225400 Sobic002G247800--Sobic002G179150 Sobic004G170900 Sobic004G170900 Sobic002G247800--Sobic004G170900 Sobic001G470100 Sobic001G470100 Sobic002G247800--Sobic001G470100 Sobic005G142500 Sobic005G142500 Sobic002G247800--Sobic005G142500 Sobic002G247800--Sobic004G285900 Sobic001G030400 Sobic001G030400 Sobic002G247800--Sobic001G030400 Sobic002G247800--Sobic010G159100 Sobic003G011100 Sobic003G011100 Sobic002G247800--Sobic003G011100 Sobic008G118800 Sobic008G118800 Sobic010G222400--Sobic008G118800 Sobic010G136400 Sobic010G136400 Sobic010G222400--Sobic010G136400 Sobic007G101900 Sobic007G101900 Sobic010G222400--Sobic007G101900 Sobic010G149700 Sobic010G149700 Sobic010G222400--Sobic010G149700 Sobic001G197300 Sobic001G197300 Sobic010G222400--Sobic001G197300 Sobic007G100032 Sobic007G100032 Sobic010G222400--Sobic007G100032 Sobic008G121400 Sobic008G121400 Sobic010G222400--Sobic008G121400 Sobic006G063400 Sobic006G063400 Sobic010G222400--Sobic006G063400 Sobic002G327400 Sobic002G327400 Sobic010G222400--Sobic002G327400 Sobic010G091600--Sobic006G129600 Sobic010G091600--Sobic003G000700 Sobic003G427700 Sobic003G427700 Sobic010G091600--Sobic003G427700 Sobic002G254300 Sobic002G254300 Sobic010G091600--Sobic002G254300 Sobic010G091600--Sobic007G225400 Sobic005G051600 Sobic005G051600 Sobic010G091600--Sobic005G051600 Sobic002G129100 Sobic002G129100 Sobic010G091600--Sobic002G129100 Sobic010G091600--Sobic001G310200 Sobic010G091600--Sobic005G142500 Sobic002G179150--Sobic002G247800 Sobic002G179150--Sobic007G214700 Sobic001G107200 Sobic001G107200 Sobic002G179150--Sobic001G107200 Sobic002G179150--Sobic001G389300 Sobic010G216600 Sobic010G216600 Sobic002G179150--Sobic010G216600 Sobic002G179150--Sobic001G030400 Sobic001G528600 Sobic001G528600 Sobic002G179150--Sobic001G528600 Sobic002G353200 Sobic002G353200 Sobic002G179150--Sobic002G353200 Sobic010G111200 Sobic010G111200 Sobic002G179150--Sobic010G111200
Octagon: transcription factors


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