Gene annotation
Transcriptome id Sobic.002G254300.1
Synonym Sb02g028962
Functional annotation expressed protein
UniProt C5X4L6
Pfam -
Panther DB PTHR35162 PTHR35162:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os09g32350.1 : expressed protein
MaizeGDB (Corn) Zm00025a014267 , Zm00025a047537
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G254300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G247800 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL17 - SBP-box gene family member, expressed -
2 Sobic.007G213400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
3 Sobic.002G179150 - -
4 Sobic.003G174700 expressed protein -
5 Sobic.001G030400 protein kinase family protein, putative, expressed -
6 Sobic.003G000700 DNA binding protein, putative, expressed -
7 Sobic.003G117500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
8 Sobic.010G091600 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
9 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
10 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
11 Sobic.005G142500 plant protein of unknown function domain containing protein, expressed -
12 Sobic.003G068000 expressed protein -
13 Sobic.001G107200 tubulin/FtsZ domain containing protein, putative, expressed K07374: tubulin alpha
14 Sobic.007G225400 phosphate-induced protein 1 conserved region domain containing protein, expressed -
15 Sobic.010G095600 RING-H2 finger protein, putative, expressed -
16 Sobic.001G429500 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed -
17 Sobic.003G427700 expressed protein -
18 Sobic.004G226200 expressed protein -
19 Sobic.004G285900 HMG1/2, putative, expressed -
20 Sobic.003G027400 VQ domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G254300 Sobic002G254300 Sobic002G247800 Sobic002G247800 Sobic002G254300--Sobic002G247800 Sobic007G213400 Sobic007G213400 Sobic002G254300--Sobic007G213400 Sobic002G179150 Sobic002G179150 Sobic002G254300--Sobic002G179150 Sobic003G174700 Sobic003G174700 Sobic002G254300--Sobic003G174700 Sobic001G030400 Sobic001G030400 Sobic002G254300--Sobic001G030400 Sobic003G000700 Sobic003G000700 Sobic002G254300--Sobic003G000700 Sobic003G117500 Sobic003G117500 Sobic002G254300--Sobic003G117500 Sobic010G091600 Sobic010G091600 Sobic002G254300--Sobic010G091600 Sobic001G475500 Sobic001G475500 Sobic002G254300--Sobic001G475500 Sobic007G225400 Sobic007G225400 Sobic002G247800--Sobic007G225400 Sobic002G247800--Sobic002G179150 Sobic004G170900 Sobic004G170900 Sobic002G247800--Sobic004G170900 Sobic001G470100 Sobic001G470100 Sobic002G247800--Sobic001G470100 Sobic005G142500 Sobic005G142500 Sobic002G247800--Sobic005G142500 Sobic004G285900 Sobic004G285900 Sobic002G247800--Sobic004G285900 Sobic002G247800--Sobic001G030400 Sobic010G159100 Sobic010G159100 Sobic002G247800--Sobic010G159100 Sobic003G011100 Sobic003G011100 Sobic002G247800--Sobic003G011100 Sobic007G213400--Sobic002G254300 Sobic005G004700 Sobic005G004700 Sobic007G213400--Sobic005G004700 Sobic003G427700 Sobic003G427700 Sobic007G213400--Sobic003G427700 Sobic001G481000 Sobic001G481000 Sobic007G213400--Sobic001G481000 Sobic007G213400--Sobic003G117500 Sobic001G316800 Sobic001G316800 Sobic007G213400--Sobic001G316800 Sobic007G213400--Sobic001G475500 Sobic008G110200 Sobic008G110200 Sobic007G213400--Sobic008G110200 Sobic002G251100 Sobic002G251100 Sobic007G213400--Sobic002G251100 Sobic002G179150--Sobic002G247800 Sobic007G214700 Sobic007G214700 Sobic002G179150--Sobic007G214700 Sobic001G107200 Sobic001G107200 Sobic002G179150--Sobic001G107200 Sobic001G389300 Sobic001G389300 Sobic002G179150--Sobic001G389300 Sobic010G216600 Sobic010G216600 Sobic002G179150--Sobic010G216600 Sobic002G179150--Sobic001G030400 Sobic001G528600 Sobic001G528600 Sobic002G179150--Sobic001G528600 Sobic002G353200 Sobic002G353200 Sobic002G179150--Sobic002G353200 Sobic010G111200 Sobic010G111200 Sobic002G179150--Sobic010G111200 Sobic004G217450 Sobic004G217450 Sobic003G174700--Sobic004G217450 Sobic003G034600 Sobic003G034600 Sobic003G174700--Sobic003G034600 Sobic006G137800 Sobic006G137800 Sobic003G174700--Sobic006G137800 Sobic006G260300 Sobic006G260300 Sobic003G174700--Sobic006G260300 Sobic006G191800 Sobic006G191800 Sobic003G174700--Sobic006G191800 Sobic010G221300 Sobic010G221300 Sobic003G174700--Sobic010G221300 Sobic003G160700 Sobic003G160700 Sobic003G174700--Sobic003G160700 Sobic001G529400 Sobic001G529400 Sobic003G174700--Sobic001G529400 Sobic001G439100 Sobic001G439100 Sobic003G174700--Sobic001G439100 Sobic006G133700 Sobic006G133700 Sobic001G030400--Sobic006G133700 Sobic001G468500 Sobic001G468500 Sobic001G030400--Sobic001G468500 Sobic003G084300 Sobic003G084300 Sobic001G030400--Sobic003G084300 Sobic001G030400--Sobic002G247800 Sobic009G165500 Sobic009G165500 Sobic001G030400--Sobic009G165500 Sobic010G222100 Sobic010G222100 Sobic001G030400--Sobic010G222100 Sobic007G009000 Sobic007G009000 Sobic001G030400--Sobic007G009000 Sobic004G331200 Sobic004G331200 Sobic001G030400--Sobic004G331200 Sobic001G030400--Sobic002G353200 Sobic006G129600 Sobic006G129600 Sobic003G000700--Sobic006G129600 Sobic010G167200 Sobic010G167200 Sobic003G000700--Sobic010G167200 Sobic006G059300 Sobic006G059300 Sobic003G000700--Sobic006G059300 Sobic006G127750 Sobic006G127750 Sobic003G000700--Sobic006G127750 Sobic001G110100 Sobic001G110100 Sobic003G000700--Sobic001G110100 Sobic001G310200 Sobic001G310200 Sobic003G000700--Sobic001G310200 Sobic010G226300 Sobic010G226300 Sobic003G000700--Sobic010G226300 Sobic010G062200 Sobic010G062200 Sobic003G000700--Sobic010G062200 Sobic002G035000 Sobic002G035000 Sobic003G000700--Sobic002G035000 Sobic003G117500--Sobic001G475500 Sobic003G027400 Sobic003G027400 Sobic003G117500--Sobic003G027400 Sobic003G117500--Sobic001G481000 Sobic001G310300 Sobic001G310300 Sobic003G117500--Sobic001G310300 Sobic007G150800 Sobic007G150800 Sobic003G117500--Sobic007G150800 Sobic001G434300 Sobic001G434300 Sobic003G117500--Sobic001G434300 Sobic003G219800 Sobic003G219800 Sobic003G117500--Sobic003G219800 Sobic002G350500 Sobic002G350500 Sobic003G117500--Sobic002G350500 Sobic001G502900 Sobic001G502900 Sobic003G117500--Sobic001G502900 Sobic010G091600--Sobic006G129600 Sobic010G091600--Sobic003G000700 Sobic010G091600--Sobic003G427700 Sobic010G091600--Sobic002G254300 Sobic010G091600--Sobic007G225400 Sobic005G051600 Sobic005G051600 Sobic010G091600--Sobic005G051600 Sobic002G129100 Sobic002G129100 Sobic010G091600--Sobic002G129100 Sobic010G091600--Sobic001G310200 Sobic010G091600--Sobic005G142500 Sobic001G475500--Sobic001G502900 Sobic001G475500--Sobic003G160700 Sobic003G122200 Sobic003G122200 Sobic001G475500--Sobic003G122200 Sobic005G113300 Sobic005G113300 Sobic001G475500--Sobic005G113300 Sobic001G475500--Sobic007G150800 Sobic009G173500 Sobic009G173500 Sobic001G475500--Sobic009G173500 Sobic001G361600 Sobic001G361600 Sobic001G475500--Sobic001G361600 Sobic004G220000 Sobic004G220000 Sobic001G475500--Sobic004G220000 Sobic001G475500--Sobic003G117500
Octagon: transcription factors


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