Gene annotation
Transcriptome id Sobic.003G059900.1
Synonym Sb03g005140, EXPA17, ATHEXPALPHA1.13, ATEXPA17, ATEXP17
Functional annotation expansin precursor, putative, expressed
UniProt C5XP60
Pfam PF01357 PF03330
Panther DB PTHR31867 PTHR31867:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01630 : expansin A17
RAP-DB (Rice) LOC_Os01g14660.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a023911 , Zm00025a027043 , Zm00025a043994 , Zm00025a023908 , Zm00025a008818 , Zm00025a024073 , Zm00025a006815 , Zm00025a006817 , Zm00025a006811 , Zm00025a006813 , Zm00025a019850 , Zm00025a019851 , Zm00025a019852 , Zm00025a019849 , Zm00025a016421 , Zm00025a053441
Brachypodium KQK05753 , KQK03594 , KQK12421
Barley HORVU3Hr1G076670.2 , HORVU1Hr1G069830.2 , HORVU1Hr1G069830.1 , HORVU1Hr1G069830.7 , HORVU1Hr1G069830.6 , HORVU1Hr1G069830.4 , HORVU3Hr1G034030.4 , HORVU3Hr1G076640.2 , HORVU3Hr1G076640.3 , HORVU3Hr1G076640.1 , HORVU3Hr1G076640.4 , HORVU5Hr1G113580.5 , HORVU5Hr1G113580.4 , HORVU2Hr1G093690.1 , HORVU2Hr1G093690.2 , HORVU3Hr1G076670.1 , HORVU5Hr1G113580.6 , HORVU5Hr1G113580.3 , HORVU5Hr1G113580.2 , HORVU3Hr1G034030.3 , HORVU3Hr1G034030.2 , HORVU3Hr1G034030.1
Wheat TraesCS3B02G348000 , TraesCS3D02G313200 , TraesCS2A02G393700 , TraesCS3D02G313400 , TraesCS5D02G494800 , TraesCS5A02G481200 , TraesCS1D02G299700 , TraesCS1A02G300200 , TraesCS1A02G300200 , TraesCS2B02G411700 , TraesCS3A02G317900 , TraesCS1B02G310300 , TraesCS3D02G175800 , TraesCS7B02G293800 , TraesCS6B02G336500 , TraesCS7D02G387400 , TraesCS7D02G387400 , TraesCS5B02G494400 , TraesCS3A02G165900 , TraesCS3D02G176000 , TraesCS3B02G200100 , TraesCS3D02G313300 , TraesCS3A02G165600 , TraesCS3B02G199900 , TraesCS2D02G391600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G228800 expressed protein -
2 Sobic.001G018600 cytochrome P450 71E1, putative, expressed -
3 Sobic.001G360400 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.001G232200 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
5 Sobic.007G021900 carrier, putative, expressed -
6 Sobic.008G148200 OsWAK116 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
7 Sobic.001G487800 expressed protein -
8 Sobic.005G080400 1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed -
9 Sobic.007G025000 expressed protein -
10 Sobic.001G232400 - -
11 Sobic.009G150500 expressed protein -
12 Sobic.005G166700 sulfotransferase domain containing protein, expressed -
13 Sobic.002G080200 receptor protein kinase, putative, expressed -
14 Sobic.009G071300 HAD superfamily phosphatase, putative, expressed -
15 Sobic.005G202200 integral membrane protein, putative, expressed -
16 Sobic.007G047500 B3 DNA binding domain containing protein, expressed -
17 Sobic.006G172500 LTPL121 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
18 Sobic.005G038300 embryogenesis transmembrane protein, putative, expressed -
19 Sobic.002G101900 - -
20 Sobic.009G033300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic003G059900 Sobic003G059900 Sobic002G228800 Sobic002G228800 Sobic003G059900--Sobic002G228800 Sobic001G018600 Sobic001G018600 Sobic003G059900--Sobic001G018600 Sobic001G360400 Sobic001G360400 Sobic003G059900--Sobic001G360400 Sobic001G232200 Sobic001G232200 Sobic003G059900--Sobic001G232200 Sobic007G021900 Sobic007G021900 Sobic003G059900--Sobic007G021900 Sobic008G148200 Sobic008G148200 Sobic003G059900--Sobic008G148200 Sobic001G487800 Sobic001G487800 Sobic003G059900--Sobic001G487800 Sobic005G080400 Sobic005G080400 Sobic003G059900--Sobic005G080400 Sobic007G025000 Sobic007G025000 Sobic003G059900--Sobic007G025000 Sobic002G228800--Sobic005G080400 Sobic001G058300 Sobic001G058300 Sobic002G228800--Sobic001G058300 Sobic002G228800--Sobic007G021900 Sobic002G228800--Sobic001G232200 Sobic006G003600 Sobic006G003600 Sobic002G228800--Sobic006G003600 Sobic003G000100 Sobic003G000100 Sobic002G228800--Sobic003G000100 Sobic003G351600 Sobic003G351600 Sobic002G228800--Sobic003G351600 Sobic005G166700 Sobic005G166700 Sobic002G228800--Sobic005G166700 Sobic002G216100 Sobic002G216100 Sobic002G228800--Sobic002G216100 Sobic001G018600--Sobic003G059900 Sobic009G071300 Sobic009G071300 Sobic001G018600--Sobic009G071300 Sobic005G224300 Sobic005G224300 Sobic001G018600--Sobic005G224300 Sobic001G018600--Sobic001G232200 Sobic001G018600--Sobic002G228800 Sobic005G037200 Sobic005G037200 Sobic001G018600--Sobic005G037200 Sobic009G150500 Sobic009G150500 Sobic001G018600--Sobic009G150500 Sobic001G232400 Sobic001G232400 Sobic001G018600--Sobic001G232400 Sobic009G033300 Sobic009G033300 Sobic001G018600--Sobic009G033300 Sobic010G206800 Sobic010G206800 Sobic001G360400--Sobic010G206800 Sobic007G047500 Sobic007G047500 Sobic001G360400--Sobic007G047500 Sobic001G360400--Sobic007G021900 Sobic001G360400--Sobic005G037200 Sobic001G360400--Sobic008G148200 Sobic007G030501 Sobic007G030501 Sobic001G360400--Sobic007G030501 Sobic001G147900 Sobic001G147900 Sobic001G360400--Sobic001G147900 Sobic002G261300 Sobic002G261300 Sobic001G360400--Sobic002G261300 Sobic001G183700 Sobic001G183700 Sobic001G360400--Sobic001G183700 Sobic001G232200--Sobic005G166700 Sobic001G232200--Sobic001G487800 Sobic010G267200 Sobic010G267200 Sobic001G232200--Sobic010G267200 Sobic001G232200--Sobic009G150500 Sobic001G232200--Sobic005G224300 Sobic005G202300 Sobic005G202300 Sobic001G232200--Sobic005G202300 Sobic003G353200 Sobic003G353200 Sobic001G232200--Sobic003G353200 Sobic003G280000 Sobic003G280000 Sobic001G232200--Sobic003G280000 Sobic001G232200--Sobic002G228800 Sobic007G021900--Sobic006G003600 Sobic007G021900--Sobic002G228800 Sobic007G021900--Sobic001G360400 Sobic006G103300 Sobic006G103300 Sobic007G021900--Sobic006G103300 Sobic003G140700 Sobic003G140700 Sobic007G021900--Sobic003G140700 Sobic007G100700 Sobic007G100700 Sobic007G021900--Sobic007G100700 Sobic003G140600 Sobic003G140600 Sobic007G021900--Sobic003G140600 Sobic004G038700 Sobic004G038700 Sobic007G021900--Sobic004G038700 Sobic004G119800 Sobic004G119800 Sobic007G021900--Sobic004G119800 Sobic006G072201 Sobic006G072201 Sobic008G148200--Sobic006G072201 Sobic008G148200--Sobic001G360400 Sobic007G094300 Sobic007G094300 Sobic008G148200--Sobic007G094300 Sobic006G277800 Sobic006G277800 Sobic008G148200--Sobic006G277800 Sobic010G088800 Sobic010G088800 Sobic008G148200--Sobic010G088800 Sobic008G148200--Sobic002G261300 Sobic008G148200--Sobic007G021900 Sobic008G148200--Sobic005G166700 Sobic008G148200--Sobic009G150500 Sobic001G487800--Sobic001G232200 Sobic001G487800--Sobic005G202300 Sobic010G168400 Sobic010G168400 Sobic001G487800--Sobic010G168400 Sobic003G282200 Sobic003G282200 Sobic001G487800--Sobic003G282200 Sobic001G487800--Sobic001G058300 Sobic001G487800--Sobic002G228800 Sobic001G487800--Sobic006G003600 Sobic001G487800--Sobic004G119800 Sobic001G487800--Sobic010G267200 Sobic005G203200 Sobic005G203200 Sobic005G080400--Sobic005G203200 Sobic005G080400--Sobic002G228800 Sobic005G080400--Sobic004G038700 Sobic005G202700 Sobic005G202700 Sobic005G080400--Sobic005G202700 Sobic007G057400 Sobic007G057400 Sobic005G080400--Sobic007G057400 Sobic009G035300 Sobic009G035300 Sobic005G080400--Sobic009G035300 Sobic002G326500 Sobic002G326500 Sobic005G080400--Sobic002G326500 Sobic005G080400--Sobic003G351600 Sobic005G080400--Sobic005G166700 Sobic005G202200 Sobic005G202200 Sobic007G025000--Sobic005G202200 Sobic005G038300 Sobic005G038300 Sobic007G025000--Sobic005G038300 Sobic002G101900 Sobic002G101900 Sobic007G025000--Sobic002G101900 Sobic001G301300 Sobic001G301300 Sobic007G025000--Sobic001G301300 Sobic004G009500 Sobic004G009500 Sobic007G025000--Sobic004G009500 Sobic003G384700 Sobic003G384700 Sobic007G025000--Sobic003G384700 Sobic007G025000--Sobic007G047500 Sobic006G122800 Sobic006G122800 Sobic007G025000--Sobic006G122800 Sobic008G181000 Sobic008G181000 Sobic007G025000--Sobic008G181000
Octagon: transcription factors


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