Gene annotation
Transcriptome id Sobic.003G083200.1,Sobic.003G083200.2
Synonym Sb03g007000
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
calmodulin binding protein, putative, expressed
UniProt A0A1W0VW66 , C5XQT3
Pfam PF07887
Panther DB PTHR31713 PTHR31713:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress GO:0005516calmodulin binding


Orthologs (automatic annotation)
TAIR AT5G57580 : Calmodulin-binding protein
RAP-DB (Rice) LOC_Os01g04280.1 : calmodulin binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a023578 , Zm00025a035574
Brachypodium KQK02563
Barley HORVU3Hr1G007290.1 , HORVU3Hr1G007290.3 , HORVU3Hr1G007290.2 , HORVU3Hr1G007290.5 , HORVU3Hr1G007290.4
Wheat TraesCS3A02G037700 , TraesCS3D02G041800 , TraesCS3B02G045900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G177000 glycosyl transferase, putative, expressed -
2 Sobic.007G014200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.010G001300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Protein transferase (At)(PubMedID : 27208977)@transferase family protein, putative, expressed -
4 Sobic.010G192366 - -
5 Sobic.005G033000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
6 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
7 Sobic.006G101900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
8 Sobic.003G040600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
9 Sobic.002G183750 - -
10 Sobic.001G169400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
11 Sobic.010G070400 DNA binding protein, putative, expressed -
12 Sobic.005G175900 expressed protein -
13 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
14 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
15 Sobic.003G017601 - -
16 Sobic.001G149400 ankyrin repeat domain-containing protein 50, putative, expressed -
17 Sobic.010G192432 - K14431: transcription factor TGA
18 Sobic.001G483600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein kinase APK1B, chloroplast precursor, putative, expressed -
19 Sobic.010G191600 cytochrome P450, putative, expressed -
20 Sobic.001G277500 TKL_IRAK_DUF26-la.6 - DUF26 kinases have homology to DUF26 containing loci, expressed -


Gene co-expression network
sample Sobic003G083200 Sobic003G083200 Sobic004G177000 Sobic004G177000 Sobic003G083200--Sobic004G177000 Sobic007G014200 Sobic007G014200 Sobic003G083200--Sobic007G014200 Sobic010G001300 Sobic010G001300 Sobic003G083200--Sobic010G001300 Sobic010G192366 Sobic010G192366 Sobic003G083200--Sobic010G192366 Sobic005G033000 Sobic005G033000 Sobic003G083200--Sobic005G033000 Sobic003G227700 Sobic003G227700 Sobic003G083200--Sobic003G227700 Sobic006G101900 Sobic006G101900 Sobic003G083200--Sobic006G101900 Sobic003G040600 Sobic003G040600 Sobic003G083200--Sobic003G040600 Sobic002G183750 Sobic002G183750 Sobic003G083200--Sobic002G183750 Sobic002G146000 Sobic002G146000 Sobic004G177000--Sobic002G146000 Sobic006G092700 Sobic006G092700 Sobic004G177000--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic004G177000--Sobic006G135300 Sobic007G073000 Sobic007G073000 Sobic004G177000--Sobic007G073000 Sobic008G164450 Sobic008G164450 Sobic004G177000--Sobic008G164450 Sobic010G113100 Sobic010G113100 Sobic004G177000--Sobic010G113100 Sobic004G177000--Sobic010G001300 Sobic010G028100 Sobic010G028100 Sobic004G177000--Sobic010G028100 Sobic006G003600 Sobic006G003600 Sobic004G177000--Sobic006G003600 Sobic010G070400 Sobic010G070400 Sobic007G014200--Sobic010G070400 Sobic005G175900 Sobic005G175900 Sobic007G014200--Sobic005G175900 Sobic001G277500 Sobic001G277500 Sobic007G014200--Sobic001G277500 Sobic001G263300 Sobic001G263300 Sobic007G014200--Sobic001G263300 Sobic006G031100 Sobic006G031100 Sobic007G014200--Sobic006G031100 Sobic003G215300 Sobic003G215300 Sobic007G014200--Sobic003G215300 Sobic010G191600 Sobic010G191600 Sobic007G014200--Sobic010G191600 Sobic004G106100 Sobic004G106100 Sobic007G014200--Sobic004G106100 Sobic007G090600 Sobic007G090600 Sobic007G014200--Sobic007G090600 Sobic001G218500 Sobic001G218500 Sobic010G001300--Sobic001G218500 Sobic004G014600 Sobic004G014600 Sobic010G001300--Sobic004G014600 Sobic007G135100 Sobic007G135100 Sobic010G001300--Sobic007G135100 Sobic004G119800 Sobic004G119800 Sobic010G001300--Sobic004G119800 Sobic002G195600 Sobic002G195600 Sobic010G001300--Sobic002G195600 Sobic006G196400 Sobic006G196400 Sobic010G001300--Sobic006G196400 Sobic010G001300--Sobic006G092700 Sobic010G097200 Sobic010G097200 Sobic010G001300--Sobic010G097200 Sobic001G209300 Sobic001G209300 Sobic010G001300--Sobic001G209300 Sobic010G192432 Sobic010G192432 Sobic010G192366--Sobic010G192432 Sobic010G192366--Sobic010G097200 Sobic001G483600 Sobic001G483600 Sobic010G192366--Sobic001G483600 Sobic010G192366--Sobic004G119800 Sobic008G037900 Sobic008G037900 Sobic010G192366--Sobic008G037900 Sobic010G192366--Sobic006G196400 Sobic005G080600 Sobic005G080600 Sobic010G192366--Sobic005G080600 Sobic010G192366--Sobic006G135300 Sobic007G100700 Sobic007G100700 Sobic010G192366--Sobic007G100700 Sobic005G033000--Sobic010G097200 Sobic003G154500 Sobic003G154500 Sobic005G033000--Sobic003G154500 Sobic004G261500 Sobic004G261500 Sobic005G033000--Sobic004G261500 Sobic009G065700 Sobic009G065700 Sobic005G033000--Sobic009G065700 Sobic001G218400 Sobic001G218400 Sobic005G033000--Sobic001G218400 Sobic001G414800 Sobic001G414800 Sobic005G033000--Sobic001G414800 Sobic002G096000 Sobic002G096000 Sobic005G033000--Sobic002G096000 Sobic004G079900 Sobic004G079900 Sobic005G033000--Sobic004G079900 Sobic001G499900 Sobic001G499900 Sobic005G033000--Sobic001G499900 Sobic010G069900 Sobic010G069900 Sobic003G227700--Sobic010G069900 Sobic003G257400 Sobic003G257400 Sobic003G227700--Sobic003G257400 Sobic010G071400 Sobic010G071400 Sobic003G227700--Sobic010G071400 Sobic006G003100 Sobic006G003100 Sobic003G227700--Sobic006G003100 Sobic001G006201 Sobic001G006201 Sobic003G227700--Sobic001G006201 Sobic007G158800 Sobic007G158800 Sobic003G227700--Sobic007G158800 Sobic003G000100 Sobic003G000100 Sobic003G227700--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic003G227700--Sobic010G152400 Sobic003G227700--Sobic004G106100 Sobic006G101900--Sobic001G414800 Sobic005G097400 Sobic005G097400 Sobic006G101900--Sobic005G097400 Sobic006G101900--Sobic001G499900 Sobic006G133300 Sobic006G133300 Sobic006G101900--Sobic006G133300 Sobic009G225800 Sobic009G225800 Sobic006G101900--Sobic009G225800 Sobic006G101900--Sobic010G191600 Sobic001G507100 Sobic001G507100 Sobic006G101900--Sobic001G507100 Sobic008G022100 Sobic008G022100 Sobic006G101900--Sobic008G022100 Sobic003G167300 Sobic003G167300 Sobic006G101900--Sobic003G167300 Sobic009G073800 Sobic009G073800 Sobic003G040600--Sobic009G073800 Sobic006G183900 Sobic006G183900 Sobic003G040600--Sobic006G183900 Sobic003G040600--Sobic003G083200 Sobic006G282300 Sobic006G282300 Sobic003G040600--Sobic006G282300 Sobic008G034700 Sobic008G034700 Sobic003G040600--Sobic008G034700 Sobic002G318200 Sobic002G318200 Sobic003G040600--Sobic002G318200 Sobic001G212451 Sobic001G212451 Sobic003G040600--Sobic001G212451 Sobic004G248500 Sobic004G248500 Sobic003G040600--Sobic004G248500 Sobic003G415400 Sobic003G415400 Sobic003G040600--Sobic003G415400 Sobic002G183750--Sobic010G028100 Sobic002G183750--Sobic001G218400 Sobic002G183750--Sobic004G119800 Sobic002G183750--Sobic006G135300 Sobic001G274400 Sobic001G274400 Sobic002G183750--Sobic001G274400 Sobic003G017601 Sobic003G017601 Sobic002G183750--Sobic003G017601 Sobic002G183750--Sobic010G070400 Sobic002G183750--Sobic006G092700 Sobic004G121600 Sobic004G121600 Sobic002G183750--Sobic004G121600
Octagon: transcription factors


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