Gene annotation
| Transcriptome id | Sobic.003G109300.1 |
|---|---|
| Synonym | Sb03g009190 |
| Functional annotation | FAD dependent oxidoreductase domain containing protein, expressed |
| UniProt | C5XFN4 |
| Pfam | PF13450 |
| Panther DB | PTHR10961 PTHR10961:SF22 |
| NCBI CDD | KOG2820; FAD-dependent oxidoreductase |
| KEGG Orthology | K00306; sarcosine oxidase / L-pipecolate oxidase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G24580 : FAD-dependent oxidoreductase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g21380.1 : FAD dependent oxidoreductase domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a047510 , Zm00025a025908 , Zm00025a023879 |
| Brachypodium | KQK04148 |
| Barley | HORVU2Hr1G024130.1 , HORVU5Hr1G074840.1 , HORVU5Hr1G074840.2 , HORVU5Hr1G074840.3 , HORVU5Hr1G074820.2 , HORVU5Hr1G074820.3 , HORVU5Hr1G074820.1 , HORVU5Hr1G074820.4 , HORVU5Hr1G074820.5 |
| Wheat | TraesCS5B02G276000 , TraesCS5D02G283800 , TraesCS5A02G276400 , TraesCS5D02G283800 , TraesCS5D02G283600 , TraesCS5D02G283600 , TraesCS5A02G276300 , TraesCS5B02G275600 , TraesCS5A02G276300 , TraesCS5A02G276200 , TraesCS5A02G276200 , TraesCS5A02G276200 , TraesCS5B02G275700 , TraesCS5B02G275700 , TraesCS5B02G275900 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G025000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@carnitine racemase like protein, putative, expressed | - |
| 2 | Sobic.002G253000 | no apical meristem protein, putative, expressed | - |
| 3 | Sobic.009G015000 | expressed protein | - |
| 4 | Sobic.006G223900 | expressed protein | - |
| 5 | Sobic.004G259700 | 60S ribosomal protein L31, putative, expressed | K02910: RP-L31e, large subunit ribosomal protein L31e |
| 6 | Sobic.007G172300 | fiber protein Fb14, putative, expressed | K03938: NADH dehydrogenase (ubiquinone) Fe-S protein 5 |
| 7 | Sobic.002G305600 | cytokinin-O-glucosyltransferase 2, putative, expressed | - |
| 8 | Sobic.009G123000 | expressed protein | - |
| 9 | Sobic.003G057366 | - | K11254: histone H4 |
| 10 | Sobic.004G099500 | 40S ribosomal protein S24, putative, expressed | K02974: RP-S24e, small subunit ribosomal protein S24e |
| 11 | Sobic.005G198300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 12 | Sobic.001G149500 | dehydrin, putative, expressed | - |
| 13 | Sobic.001G416800 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11251: histone H2A |
| 14 | Sobic.002G311400 | UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 15 | Sobic.010G057100 | expressed protein | K02983: RP-S30e, small subunit ribosomal protein S30e |
| 16 | Sobic.001G416900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11251: histone H2A |
| 17 | Sobic.001G009700 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11251: histone H2A |
| 18 | Sobic.004G262900 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 19 | Sobic.003G127600 | ubiquitin-conjugating enzyme, putative, expressed | K06688: UBE2C, ubiquitin-conjugating enzyme E2 C |
| 20 | Sobic.006G244800 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
Gene co-expression network
Octagon: transcription factors
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