Gene annotation
Transcriptome id Sobic.006G223900.1
Synonym Sb06g029320
Functional annotation expressed protein
UniProt C5YGI4
Pfam -
Panther DB PTHR33974 PTHR33974:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g53560.1 : expressed protein
MaizeGDB (Corn) Zm00025a009689 , Zm00025a057081
Brachypodium KQJ84757
Barley -
Wheat TraesCS2B02G497700 , TraesCS2B02G498200 , TraesCS2A02G474600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G025000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@carnitine racemase like protein, putative, expressed -
2 Sobic.004G262900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G109300 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
4 Sobic.001G149500 dehydrin, putative, expressed -
5 Sobic.003G125000 serpin domain containing protein, putative, expressed K13963: serpin B
6 Sobic.004G087800 pleiotropic drug resistance protein, putative, expressed -
7 Sobic.007G172300 fiber protein Fb14, putative, expressed K03938: NADH dehydrogenase (ubiquinone) Fe-S protein 5
8 Sobic.009G015000 expressed protein -
9 Sobic.009G187900 ethylene-responsive protein related, putative, expressed -
10 Sobic.008G088860 - -
11 Sobic.007G028400 - -
12 Sobic.003G424000 sulfotransferase domain containing protein, expressed -
13 Sobic.010G132000 arabinogalactan peptide 23 precursor, putative, expressed -
14 Sobic.003G256500 heavy metal-associated domain containing protein, expressed -
15 Sobic.001G181300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@folic acid binding protein, putative, expressed -
16 Sobic.008G088803 - K12183: TSG101, STP22, ESCRT-I complex subunit TSG101
17 Sobic.005G038700 transcription factor, putative, expressed K14431: transcription factor TGA
18 Sobic.001G062600 aldehyde oxidase, putative, expressed -
19 Sobic.008G056100 - -
20 Sobic.002G253000 no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic006G223900 Sobic006G223900 Sobic003G025000 Sobic003G025000 Sobic006G223900--Sobic003G025000 Sobic004G262900 Sobic004G262900 Sobic006G223900--Sobic004G262900 Sobic003G109300 Sobic003G109300 Sobic006G223900--Sobic003G109300 Sobic001G149500 Sobic001G149500 Sobic006G223900--Sobic001G149500 Sobic003G125000 Sobic003G125000 Sobic006G223900--Sobic003G125000 Sobic004G087800 Sobic004G087800 Sobic006G223900--Sobic004G087800 Sobic007G172300 Sobic007G172300 Sobic006G223900--Sobic007G172300 Sobic009G015000 Sobic009G015000 Sobic006G223900--Sobic009G015000 Sobic009G187900 Sobic009G187900 Sobic006G223900--Sobic009G187900 Sobic003G025000--Sobic003G109300 Sobic003G025000--Sobic006G223900 Sobic003G025000--Sobic001G149500 Sobic003G025000--Sobic009G015000 Sobic002G311400 Sobic002G311400 Sobic003G025000--Sobic002G311400 Sobic008G088803 Sobic008G088803 Sobic003G025000--Sobic008G088803 Sobic003G025000--Sobic004G262900 Sobic008G088860 Sobic008G088860 Sobic003G025000--Sobic008G088860 Sobic001G329600 Sobic001G329600 Sobic003G025000--Sobic001G329600 Sobic004G262900--Sobic001G149500 Sobic004G262900--Sobic006G223900 Sobic004G262900--Sobic003G025000 Sobic006G244800 Sobic006G244800 Sobic004G262900--Sobic006G244800 Sobic004G262900--Sobic009G015000 Sobic007G028400 Sobic007G028400 Sobic004G262900--Sobic007G028400 Sobic002G348900 Sobic002G348900 Sobic004G262900--Sobic002G348900 Sobic004G262900--Sobic002G311400 Sobic004G262900--Sobic007G172300 Sobic003G109300--Sobic003G025000 Sobic002G253000 Sobic002G253000 Sobic003G109300--Sobic002G253000 Sobic003G109300--Sobic009G015000 Sobic003G109300--Sobic006G223900 Sobic004G259700 Sobic004G259700 Sobic003G109300--Sobic004G259700 Sobic003G109300--Sobic007G172300 Sobic002G305600 Sobic002G305600 Sobic003G109300--Sobic002G305600 Sobic009G123000 Sobic009G123000 Sobic003G109300--Sobic009G123000 Sobic003G057366 Sobic003G057366 Sobic003G109300--Sobic003G057366 Sobic001G149500--Sobic004G262900 Sobic001G149500--Sobic003G025000 Sobic001G149500--Sobic006G223900 Sobic001G149500--Sobic002G311400 Sobic001G041000 Sobic001G041000 Sobic001G149500--Sobic001G041000 Sobic001G149500--Sobic006G244800 Sobic001G149500--Sobic009G015000 Sobic001G149500--Sobic003G109300 Sobic004G035200 Sobic004G035200 Sobic001G149500--Sobic004G035200 Sobic001G270200 Sobic001G270200 Sobic003G125000--Sobic001G270200 Sobic001G160400 Sobic001G160400 Sobic003G125000--Sobic001G160400 Sobic001G272700 Sobic001G272700 Sobic003G125000--Sobic001G272700 Sobic004G072400 Sobic004G072400 Sobic003G125000--Sobic004G072400 Sobic005G161500 Sobic005G161500 Sobic003G125000--Sobic005G161500 Sobic006G092200 Sobic006G092200 Sobic003G125000--Sobic006G092200 Sobic007G165000 Sobic007G165000 Sobic003G125000--Sobic007G165000 Sobic001G303600 Sobic001G303600 Sobic003G125000--Sobic001G303600 Sobic001G288900 Sobic001G288900 Sobic003G125000--Sobic001G288900 Sobic010G241500 Sobic010G241500 Sobic004G087800--Sobic010G241500 Sobic005G011500 Sobic005G011500 Sobic004G087800--Sobic005G011500 Sobic010G002500 Sobic010G002500 Sobic004G087800--Sobic010G002500 Sobic004G087800--Sobic008G088803 Sobic002G387400 Sobic002G387400 Sobic004G087800--Sobic002G387400 Sobic004G087800--Sobic006G223900 Sobic006G073700 Sobic006G073700 Sobic004G087800--Sobic006G073700 Sobic008G192400 Sobic008G192400 Sobic004G087800--Sobic008G192400 Sobic004G044500 Sobic004G044500 Sobic004G087800--Sobic004G044500 Sobic003G395500 Sobic003G395500 Sobic007G172300--Sobic003G395500 Sobic007G172300--Sobic009G015000 Sobic003G187100 Sobic003G187100 Sobic007G172300--Sobic003G187100 Sobic007G172300--Sobic003G057366 Sobic004G128000 Sobic004G128000 Sobic007G172300--Sobic004G128000 Sobic007G172300--Sobic004G259700 Sobic001G416900 Sobic001G416900 Sobic007G172300--Sobic001G416900 Sobic004G099500 Sobic004G099500 Sobic007G172300--Sobic004G099500 Sobic001G416800 Sobic001G416800 Sobic007G172300--Sobic001G416800 Sobic010G057100 Sobic010G057100 Sobic009G015000--Sobic010G057100 Sobic009G015000--Sobic004G099500 Sobic009G015000--Sobic004G128000 Sobic009G015000--Sobic007G172300 Sobic004G335600 Sobic004G335600 Sobic009G015000--Sobic004G335600 Sobic003G322532 Sobic003G322532 Sobic009G015000--Sobic003G322532 Sobic009G015000--Sobic002G253000 Sobic009G015000--Sobic003G057366 Sobic009G015000--Sobic003G395500 Sobic004G162600 Sobic004G162600 Sobic009G187900--Sobic004G162600 Sobic003G250340 Sobic003G250340 Sobic009G187900--Sobic003G250340 Sobic001G087500 Sobic001G087500 Sobic009G187900--Sobic001G087500 Sobic005G038700 Sobic005G038700 Sobic009G187900--Sobic005G038700 Sobic010G278400 Sobic010G278400 Sobic009G187900--Sobic010G278400 Sobic004G244500 Sobic004G244500 Sobic009G187900--Sobic004G244500 Sobic006G260101 Sobic006G260101 Sobic009G187900--Sobic006G260101 Sobic002G334900 Sobic002G334900 Sobic009G187900--Sobic002G334900 Sobic004G205400 Sobic004G205400 Sobic009G187900--Sobic004G205400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.