Gene annotation
Transcriptome id Sobic.008G088803.1
Synonym -
Functional annotation -
UniProt C6JRL9 , A0A109NDP8
Pfam PF09454 PF05743
Panther DB PTHR23306 PTHR23306:SF19
NCBI CDD KOG2391; Vacuolar sorting protein/ubiquitin receptor VPS23
KEGG Orthology K12183; TSG101, STP22, ESCRT-I complex subunit TSG101
Gene Ontology GO:0015031; protein transport GO:0006464cellular protein modification process


Orthologs (automatic annotation)
TAIR AT2G38830 : Ubiquitin-conjugating enzyme/RWD-like protein
RAP-DB (Rice) LOC_Os02g58640.1 : tumor susceptibility gene 101, putative, expressed
MaizeGDB (Corn) Zm00025a054296
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G523300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
2 Sobic.003G406240 - -
3 Sobic.002G396900 csAtPR5, putative, expressed -
4 Sobic.008G096150 - -
5 Sobic.003G295200 serine/threonine protein kinase, putative, expressed -
6 Sobic.010G200800 protein kinase domain containing protein, expressed -
7 Sobic.009G031300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide containing protein, putative, expressed -
8 Sobic.001G309000 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
9 Sobic.001G400101 - -
10 Sobic.010G191200 - -
11 Sobic.006G037000 - -
12 Sobic.010G150600 - -
13 Sobic.004G205400 - -
14 Sobic.002G326200 TKL_IRAK_DUF26-la.4 - DUF26 kinases have homology to DUF26 containing loci, expressed -
15 Sobic.004G160950 - -
16 Sobic.010G055600 ThiF family domain containing protein, putative, expressed K11996: MOCS3, adenylyltransferase and sulfurtransferase
17 Sobic.002G271900 EAP30/Vps36 family domain containing protein, expressed K12188: SNF8, ESCRT-II complex subunit VPS22
18 Sobic.007G174100 carrier, putative, expressed -
19 Sobic.010G060701 - K07964: heparanase
20 Sobic.002G234900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed -


Gene co-expression network
sample Sobic008G088803 Sobic008G088803 Sobic001G523300 Sobic001G523300 Sobic008G088803--Sobic001G523300 Sobic003G406240 Sobic003G406240 Sobic008G088803--Sobic003G406240 Sobic002G396900 Sobic002G396900 Sobic008G088803--Sobic002G396900 Sobic008G096150 Sobic008G096150 Sobic008G088803--Sobic008G096150 Sobic003G295200 Sobic003G295200 Sobic008G088803--Sobic003G295200 Sobic010G200800 Sobic010G200800 Sobic008G088803--Sobic010G200800 Sobic009G031300 Sobic009G031300 Sobic008G088803--Sobic009G031300 Sobic001G309000 Sobic001G309000 Sobic008G088803--Sobic001G309000 Sobic001G400101 Sobic001G400101 Sobic008G088803--Sobic001G400101 Sobic001G523300--Sobic003G406240 Sobic001G523300--Sobic002G396900 Sobic001G523300--Sobic008G096150 Sobic001G523300--Sobic009G031300 Sobic006G037000 Sobic006G037000 Sobic001G523300--Sobic006G037000 Sobic001G523300--Sobic010G200800 Sobic009G072400 Sobic009G072400 Sobic001G523300--Sobic009G072400 Sobic002G326200 Sobic002G326200 Sobic001G523300--Sobic002G326200 Sobic007G174100 Sobic007G174100 Sobic001G523300--Sobic007G174100 Sobic003G406240--Sobic001G523300 Sobic003G406240--Sobic002G396900 Sobic003G406240--Sobic009G031300 Sobic003G406240--Sobic006G037000 Sobic003G406240--Sobic008G096150 Sobic002G359200 Sobic002G359200 Sobic003G406240--Sobic002G359200 Sobic003G406240--Sobic009G072400 Sobic003G406240--Sobic010G200800 Sobic004G205400 Sobic004G205400 Sobic003G406240--Sobic004G205400 Sobic002G396900--Sobic009G031300 Sobic002G396900--Sobic001G523300 Sobic002G396900--Sobic006G037000 Sobic002G396900--Sobic010G200800 Sobic002G396900--Sobic003G406240 Sobic002G231800 Sobic002G231800 Sobic002G396900--Sobic002G231800 Sobic002G396900--Sobic008G096150 Sobic003G149900 Sobic003G149900 Sobic002G396900--Sobic003G149900 Sobic002G396900--Sobic007G174100 Sobic008G096150--Sobic007G174100 Sobic010G150600 Sobic010G150600 Sobic008G096150--Sobic010G150600 Sobic008G096150--Sobic001G523300 Sobic008G096150--Sobic002G326200 Sobic001G212701 Sobic001G212701 Sobic008G096150--Sobic001G212701 Sobic002G234900 Sobic002G234900 Sobic008G096150--Sobic002G234900 Sobic008G096150--Sobic009G031300 Sobic008G096150--Sobic010G200800 Sobic008G096150--Sobic001G309000 Sobic003G295200--Sobic010G200800 Sobic003G295200--Sobic002G326200 Sobic003G239700 Sobic003G239700 Sobic003G295200--Sobic003G239700 Sobic006G109850 Sobic006G109850 Sobic003G295200--Sobic006G109850 Sobic003G295200--Sobic009G031300 Sobic003G295200--Sobic002G396900 Sobic003G295200--Sobic001G523300 Sobic009G152901 Sobic009G152901 Sobic003G295200--Sobic009G152901 Sobic003G295200--Sobic008G096150 Sobic010G200800--Sobic009G031300 Sobic010G200800--Sobic002G326200 Sobic010G200800--Sobic009G152901 Sobic010G200800--Sobic003G149900 Sobic003G008850 Sobic003G008850 Sobic010G200800--Sobic003G008850 Sobic010G200800--Sobic006G037000 Sobic004G016600 Sobic004G016600 Sobic010G200800--Sobic004G016600 Sobic003G038300 Sobic003G038300 Sobic010G200800--Sobic003G038300 Sobic010G200800--Sobic007G174100 Sobic009G031300--Sobic006G037000 Sobic009G031300--Sobic002G396900 Sobic009G031300--Sobic010G200800 Sobic009G031300--Sobic003G149900 Sobic009G031300--Sobic007G174100 Sobic008G096900 Sobic008G096900 Sobic009G031300--Sobic008G096900 Sobic005G076100 Sobic005G076100 Sobic009G031300--Sobic005G076100 Sobic009G031300--Sobic001G523300 Sobic001G115900 Sobic001G115900 Sobic009G031300--Sobic001G115900 Sobic003G279600 Sobic003G279600 Sobic001G309000--Sobic003G279600 Sobic004G160950 Sobic004G160950 Sobic001G309000--Sobic004G160950 Sobic001G309000--Sobic008G096150 Sobic001G309000--Sobic001G212701 Sobic001G309000--Sobic007G174100 Sobic003G178400 Sobic003G178400 Sobic001G309000--Sobic003G178400 Sobic010G132300 Sobic010G132300 Sobic001G309000--Sobic010G132300 Sobic010G055600 Sobic010G055600 Sobic001G309000--Sobic010G055600 Sobic006G110600 Sobic006G110600 Sobic001G309000--Sobic006G110600 Sobic009G184500 Sobic009G184500 Sobic001G400101--Sobic009G184500 Sobic001G490600 Sobic001G490600 Sobic001G400101--Sobic001G490600 Sobic009G020800 Sobic009G020800 Sobic001G400101--Sobic009G020800 Sobic008G096300 Sobic008G096300 Sobic001G400101--Sobic008G096300 Sobic001G400101--Sobic010G150600 Sobic010G060701 Sobic010G060701 Sobic001G400101--Sobic010G060701 Sobic009G144050 Sobic009G144050 Sobic001G400101--Sobic009G144050 Sobic009G170301 Sobic009G170301 Sobic001G400101--Sobic009G170301 Sobic004G288900 Sobic004G288900 Sobic001G400101--Sobic004G288900
Octagon: transcription factors


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