Gene annotation
Transcriptome id Sobic.003G025000.1
Synonym PEC12, ECI2, ECHIB, ATECI2, IBR10, Sb03g002400
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
carnitine racemase like protein, putative, expressed
UniProt C5XL69
Pfam PF00378
Panther DB PTHR11941 PTHR11941:SF84
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G65520 : delta(3), delta(2)-enoyl CoA isomerase 1
RAP-DB (Rice) LOC_Os01g10830.1 : carnitine racemase like protein, putative, expressed
MaizeGDB (Corn) Zm00025a022955
Brachypodium KQK03238
Barley HORVU3Hr1G026050.2 , HORVU3Hr1G026050.3 , HORVU3Hr1G026050.4 , HORVU3Hr1G026030.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G025000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G109300 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
2 Sobic.006G223900 expressed protein -
3 Sobic.001G149500 dehydrin, putative, expressed -
4 Sobic.009G015000 expressed protein -
5 Sobic.002G311400 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
6 Sobic.008G088803 - K12183: TSG101, STP22, ESCRT-I complex subunit TSG101
7 Sobic.004G262900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.008G088860 - -
9 Sobic.001G329600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.001G416800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
11 Sobic.007G172300 fiber protein Fb14, putative, expressed K03938: NADH dehydrogenase (ubiquinone) Fe-S protein 5
12 Sobic.002G253000 no apical meristem protein, putative, expressed -
13 Sobic.003G057366 - K11254: histone H4
14 Sobic.002G074400 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
15 Sobic.004G230900 RNA recognition motif containing protein, putative, expressed -
16 Sobic.004G259700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
17 Sobic.001G416900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
18 Sobic.002G387400 calmodulin-binding protein, putative, expressed -
19 Sobic.002G056300 AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
20 Sobic.009G123000 expressed protein -


Gene co-expression network
sample Sobic003G025000 Sobic003G025000 Sobic003G109300 Sobic003G109300 Sobic003G025000--Sobic003G109300 Sobic006G223900 Sobic006G223900 Sobic003G025000--Sobic006G223900 Sobic001G149500 Sobic001G149500 Sobic003G025000--Sobic001G149500 Sobic009G015000 Sobic009G015000 Sobic003G025000--Sobic009G015000 Sobic002G311400 Sobic002G311400 Sobic003G025000--Sobic002G311400 Sobic008G088803 Sobic008G088803 Sobic003G025000--Sobic008G088803 Sobic004G262900 Sobic004G262900 Sobic003G025000--Sobic004G262900 Sobic008G088860 Sobic008G088860 Sobic003G025000--Sobic008G088860 Sobic001G329600 Sobic001G329600 Sobic003G025000--Sobic001G329600 Sobic003G109300--Sobic003G025000 Sobic002G253000 Sobic002G253000 Sobic003G109300--Sobic002G253000 Sobic003G109300--Sobic009G015000 Sobic003G109300--Sobic006G223900 Sobic004G259700 Sobic004G259700 Sobic003G109300--Sobic004G259700 Sobic007G172300 Sobic007G172300 Sobic003G109300--Sobic007G172300 Sobic002G305600 Sobic002G305600 Sobic003G109300--Sobic002G305600 Sobic009G123000 Sobic009G123000 Sobic003G109300--Sobic009G123000 Sobic003G057366 Sobic003G057366 Sobic003G109300--Sobic003G057366 Sobic006G223900--Sobic003G025000 Sobic006G223900--Sobic004G262900 Sobic006G223900--Sobic003G109300 Sobic006G223900--Sobic001G149500 Sobic003G125000 Sobic003G125000 Sobic006G223900--Sobic003G125000 Sobic004G087800 Sobic004G087800 Sobic006G223900--Sobic004G087800 Sobic006G223900--Sobic007G172300 Sobic006G223900--Sobic009G015000 Sobic009G187900 Sobic009G187900 Sobic006G223900--Sobic009G187900 Sobic001G149500--Sobic004G262900 Sobic001G149500--Sobic003G025000 Sobic001G149500--Sobic006G223900 Sobic001G149500--Sobic002G311400 Sobic001G041000 Sobic001G041000 Sobic001G149500--Sobic001G041000 Sobic006G244800 Sobic006G244800 Sobic001G149500--Sobic006G244800 Sobic001G149500--Sobic009G015000 Sobic001G149500--Sobic003G109300 Sobic004G035200 Sobic004G035200 Sobic001G149500--Sobic004G035200 Sobic010G057100 Sobic010G057100 Sobic009G015000--Sobic010G057100 Sobic004G099500 Sobic004G099500 Sobic009G015000--Sobic004G099500 Sobic004G128000 Sobic004G128000 Sobic009G015000--Sobic004G128000 Sobic009G015000--Sobic007G172300 Sobic004G335600 Sobic004G335600 Sobic009G015000--Sobic004G335600 Sobic003G322532 Sobic003G322532 Sobic009G015000--Sobic003G322532 Sobic009G015000--Sobic002G253000 Sobic009G015000--Sobic003G057366 Sobic003G395500 Sobic003G395500 Sobic009G015000--Sobic003G395500 Sobic009G155500 Sobic009G155500 Sobic002G311400--Sobic009G155500 Sobic010G099600 Sobic010G099600 Sobic002G311400--Sobic010G099600 Sobic004G334100 Sobic004G334100 Sobic002G311400--Sobic004G334100 Sobic002G311400--Sobic003G025000 Sobic001G416800 Sobic001G416800 Sobic002G311400--Sobic001G416800 Sobic005G198300 Sobic005G198300 Sobic002G311400--Sobic005G198300 Sobic002G311400--Sobic003G057366 Sobic002G056300 Sobic002G056300 Sobic002G311400--Sobic002G056300 Sobic002G311400--Sobic009G123000 Sobic001G523300 Sobic001G523300 Sobic008G088803--Sobic001G523300 Sobic003G406240 Sobic003G406240 Sobic008G088803--Sobic003G406240 Sobic002G396900 Sobic002G396900 Sobic008G088803--Sobic002G396900 Sobic008G096150 Sobic008G096150 Sobic008G088803--Sobic008G096150 Sobic003G295200 Sobic003G295200 Sobic008G088803--Sobic003G295200 Sobic010G200800 Sobic010G200800 Sobic008G088803--Sobic010G200800 Sobic009G031300 Sobic009G031300 Sobic008G088803--Sobic009G031300 Sobic001G309000 Sobic001G309000 Sobic008G088803--Sobic001G309000 Sobic001G400101 Sobic001G400101 Sobic008G088803--Sobic001G400101 Sobic004G262900--Sobic001G149500 Sobic004G262900--Sobic006G223900 Sobic004G262900--Sobic003G025000 Sobic004G262900--Sobic006G244800 Sobic004G262900--Sobic009G015000 Sobic007G028400 Sobic007G028400 Sobic004G262900--Sobic007G028400 Sobic002G348900 Sobic002G348900 Sobic004G262900--Sobic002G348900 Sobic004G262900--Sobic002G311400 Sobic004G262900--Sobic007G172300 Sobic003G379500 Sobic003G379500 Sobic008G088860--Sobic003G379500 Sobic008G088860--Sobic009G031300 Sobic005G076100 Sobic005G076100 Sobic008G088860--Sobic005G076100 Sobic006G037000 Sobic006G037000 Sobic008G088860--Sobic006G037000 Sobic001G115900 Sobic001G115900 Sobic008G088860--Sobic001G115900 Sobic008G096900 Sobic008G096900 Sobic008G088860--Sobic008G096900 Sobic009G082400 Sobic009G082400 Sobic008G088860--Sobic009G082400 Sobic004G329100 Sobic004G329100 Sobic008G088860--Sobic004G329100 Sobic001G541900 Sobic001G541900 Sobic008G088860--Sobic001G541900 Sobic004G230900 Sobic004G230900 Sobic001G329600--Sobic004G230900 Sobic001G329600--Sobic001G416800 Sobic001G329600--Sobic002G056300 Sobic002G041533 Sobic002G041533 Sobic001G329600--Sobic002G041533 Sobic002G403400 Sobic002G403400 Sobic001G329600--Sobic002G403400 Sobic003G127600 Sobic003G127600 Sobic001G329600--Sobic003G127600 Sobic001G329600--Sobic009G155500 Sobic002G059200 Sobic002G059200 Sobic001G329600--Sobic002G059200 Sobic001G193600 Sobic001G193600 Sobic001G329600--Sobic001G193600
Octagon: transcription factors


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