Gene annotation
Transcriptome id Sobic.003G162633.1
Synonym -
Functional annotation -
UniProt A0A1W0VXK2
Pfam PF00098
Panther DB PTHR23002 PTHR23002:SF63
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G43590 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os04g45890.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G515600 expressed protein -
2 Sobic.003G121400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@expressed protein -
3 Sobic.004G279300 photoperiodic flowering time gene(PubMedID : 22394582)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
4 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
5 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.005G117901 - -
7 Sobic.010G074700 phosphopantothenoylcysteine decarboxylase, putative, expressed -
8 Sobic.005G130450 - -
9 Sobic.004G112500 - -
10 Sobic.003G117000 late embryogenesis abundant protein, putative, expressed -
11 Sobic.008G015700 major facilitator superfamily antiporter, putative, expressed -
12 Sobic.K009900 autophagy-related protein 8D, putative, expressed K08341: GABARAP, ATG8, GABA(A) receptor-associated protein
13 Sobic.004G208400 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
14 Sobic.004G096200 - -
15 Sobic.004G240900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
16 Sobic.001G272000 - -
17 Sobic.002G115801 - -
18 Sobic.001G243901 - -
19 Sobic.004G164600 - -
20 Sobic.004G212800 - -


Gene co-expression network
sample Sobic003G162633 Sobic003G162633 Sobic001G515600 Sobic001G515600 Sobic003G162633--Sobic001G515600 Sobic003G121400 Sobic003G121400 Sobic003G162633--Sobic003G121400 Sobic004G279300 Sobic004G279300 Sobic003G162633--Sobic004G279300 Sobic001G024200 Sobic001G024200 Sobic003G162633--Sobic001G024200 Sobic007G211000 Sobic007G211000 Sobic003G162633--Sobic007G211000 Sobic005G117901 Sobic005G117901 Sobic003G162633--Sobic005G117901 Sobic010G074700 Sobic010G074700 Sobic003G162633--Sobic010G074700 Sobic005G130450 Sobic005G130450 Sobic003G162633--Sobic005G130450 Sobic004G112500 Sobic004G112500 Sobic003G162633--Sobic004G112500 Sobic001G515600--Sobic003G121400 Sobic001G515600--Sobic004G279300 Sobic001G515600--Sobic005G117901 Sobic001G515600--Sobic005G130450 Sobic001G515600--Sobic007G211000 Sobic004G096200 Sobic004G096200 Sobic001G515600--Sobic004G096200 Sobic001G515600--Sobic001G024200 Sobic001G243901 Sobic001G243901 Sobic001G515600--Sobic001G243901 Sobic003G117000 Sobic003G117000 Sobic001G515600--Sobic003G117000 Sobic003G121400--Sobic001G515600 Sobic003G121400--Sobic004G279300 Sobic003G121400--Sobic005G117901 Sobic003G121400--Sobic003G117000 Sobic003G121400--Sobic005G130450 Sobic003G121400--Sobic007G211000 Sobic003G121400--Sobic001G024200 Sobic001G222300 Sobic001G222300 Sobic003G121400--Sobic001G222300 Sobic004G208400 Sobic004G208400 Sobic003G121400--Sobic004G208400 Sobic004G279300--Sobic001G515600 Sobic004G279300--Sobic003G121400 Sobic004G279300--Sobic005G117901 Sobic004G279300--Sobic005G130450 Sobic004G279300--Sobic004G096200 Sobic004G279300--Sobic003G117000 Sobic004G279300--Sobic001G243901 Sobic004G279300--Sobic007G211000 Sobic004G279300--Sobic004G208400 Sobic004G212800 Sobic004G212800 Sobic001G024200--Sobic004G212800 Sobic001G024200--Sobic007G211000 Sobic001G024200--Sobic004G112500 Sobic003G204000 Sobic003G204000 Sobic001G024200--Sobic003G204000 Sobic001G272000 Sobic001G272000 Sobic001G024200--Sobic001G272000 Sobic004G164600 Sobic004G164600 Sobic001G024200--Sobic004G164600 SobicK009900 SobicK009900 Sobic001G024200--SobicK009900 Sobic001G439500 Sobic001G439500 Sobic001G024200--Sobic001G439500 Sobic010G248200 Sobic010G248200 Sobic001G024200--Sobic010G248200 Sobic007G211000--Sobic001G024200 Sobic007G211000--Sobic004G112500 Sobic010G124001 Sobic010G124001 Sobic007G211000--Sobic010G124001 Sobic007G211000--Sobic003G117000 Sobic007G211000--Sobic001G272000 Sobic007G211000--Sobic001G243901 Sobic007G211000--Sobic005G117901 Sobic007G211000--Sobic004G212800 Sobic007G211000--Sobic010G248200 Sobic005G117901--Sobic001G243901 Sobic008G101350 Sobic008G101350 Sobic005G117901--Sobic008G101350 Sobic005G117901--Sobic004G096200 Sobic005G117901--Sobic005G130450 Sobic005G117901--Sobic004G279300 Sobic005G117901--Sobic001G515600 Sobic005G117901--Sobic007G211000 Sobic002G048300 Sobic002G048300 Sobic005G117901--Sobic002G048300 Sobic010G074700--Sobic001G024200 Sobic010G074700--Sobic003G204000 Sobic010G074700--Sobic004G112500 Sobic004G118700 Sobic004G118700 Sobic010G074700--Sobic004G118700 Sobic010G074700--Sobic005G117901 Sobic010G074700--Sobic005G130450 Sobic010G074700--Sobic007G211000 Sobic010G074700--Sobic001G243901 Sobic008G167300 Sobic008G167300 Sobic010G074700--Sobic008G167300 Sobic005G130450--Sobic005G117901 Sobic005G130450--Sobic004G096200 Sobic005G130450--Sobic001G515600 Sobic005G130450--Sobic008G101350 Sobic005G130450--Sobic004G279300 Sobic005G130450--Sobic001G243901 Sobic005G130450--Sobic007G211000 Sobic005G130450--Sobic003G121400 Sobic005G130450--Sobic004G112500 Sobic004G112500--Sobic001G024200 Sobic004G112500--Sobic004G212800 Sobic004G112500--Sobic007G211000 Sobic001G543900 Sobic001G543900 Sobic004G112500--Sobic001G543900 Sobic004G112500--Sobic004G164600 Sobic004G112500--Sobic010G248200 Sobic004G112500--Sobic010G124001 Sobic008G157950 Sobic008G157950 Sobic004G112500--Sobic008G157950 Sobic008G042250 Sobic008G042250 Sobic004G112500--Sobic008G042250
Octagon: transcription factors


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