Gene annotation
Transcriptome id Sobic.003G285300.1
Synonym Sb03g033628
Functional annotation OsFBX107 - F-box domain containing protein, expressed
UniProt C5XJ25
Pfam -
Panther DB PTHR34591 PTHR34591:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g47420.1 : OsFBX107 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU7Hr1G017060.1
Wheat TraesCS4A02G372700
Populus -


JBrowse

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cDNA sequences
Sobic.003G285300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
2 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
3 Sobic.003G348400 ankyrin repeat-containing protein, putative, expressed -
4 Sobic.001G501000 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
5 Sobic.006G091100 expressed protein -
6 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
7 Sobic.004G122300 - -
8 Sobic.002G378800 GRAM domain containing protein, expressed -
9 Sobic.006G237900 UBA/TS-N domain containing protein, expressed -
10 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
11 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
12 Sobic.006G007800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@legume lectins beta domain containing protein, putative, expressed -
13 Sobic.006G192700 expressed protein -
14 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
15 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
16 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
17 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
18 Sobic.003G321300 disease resistance protein RPS2, putative, expressed K13459: disease resistance protein RPS2
19 Sobic.002G251700 no apical meristem protein, putative, expressed -
20 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54


Gene co-expression network
sample Sobic003G285300 Sobic003G285300 Sobic003G338400 Sobic003G338400 Sobic003G285300--Sobic003G338400 Sobic004G102400 Sobic004G102400 Sobic003G285300--Sobic004G102400 Sobic003G348400 Sobic003G348400 Sobic003G285300--Sobic003G348400 Sobic001G501000 Sobic001G501000 Sobic003G285300--Sobic001G501000 Sobic006G091100 Sobic006G091100 Sobic003G285300--Sobic006G091100 Sobic001G057800 Sobic001G057800 Sobic003G285300--Sobic001G057800 Sobic004G122300 Sobic004G122300 Sobic003G285300--Sobic004G122300 Sobic002G378800 Sobic002G378800 Sobic003G285300--Sobic002G378800 Sobic006G237900 Sobic006G237900 Sobic003G285300--Sobic006G237900 Sobic003G338400--Sobic004G102400 Sobic003G338400--Sobic003G348400 Sobic004G341200 Sobic004G341200 Sobic003G338400--Sobic004G341200 Sobic009G167700 Sobic009G167700 Sobic003G338400--Sobic009G167700 Sobic010G016400 Sobic010G016400 Sobic003G338400--Sobic010G016400 Sobic001G003000 Sobic001G003000 Sobic003G338400--Sobic001G003000 Sobic001G158500 Sobic001G158500 Sobic003G338400--Sobic001G158500 Sobic006G140000 Sobic006G140000 Sobic003G338400--Sobic006G140000 Sobic001G089800 Sobic001G089800 Sobic003G338400--Sobic001G089800 Sobic004G102400--Sobic003G338400 Sobic004G102400--Sobic001G158500 Sobic004G102400--Sobic001G003000 Sobic004G102400--Sobic009G167700 Sobic005G150800 Sobic005G150800 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic004G102400--Sobic001G089800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic007G125900 Sobic007G125900 Sobic003G348400--Sobic007G125900 Sobic005G117400 Sobic005G117400 Sobic003G348400--Sobic005G117400 Sobic001G151800 Sobic001G151800 Sobic003G348400--Sobic001G151800 Sobic003G348400--Sobic003G338400 Sobic003G348400--Sobic004G102400 Sobic003G348400--Sobic006G140000 Sobic003G348400--Sobic006G091100 Sobic005G212700 Sobic005G212700 Sobic003G348400--Sobic005G212700 Sobic003G348400--Sobic001G003000 Sobic004G091200 Sobic004G091200 Sobic001G501000--Sobic004G091200 Sobic003G201900 Sobic003G201900 Sobic001G501000--Sobic003G201900 Sobic003G416400 Sobic003G416400 Sobic001G501000--Sobic003G416400 Sobic010G129600 Sobic010G129600 Sobic001G501000--Sobic010G129600 Sobic001G398950 Sobic001G398950 Sobic001G501000--Sobic001G398950 Sobic002G105200 Sobic002G105200 Sobic001G501000--Sobic002G105200 Sobic006G115466 Sobic006G115466 Sobic001G501000--Sobic006G115466 Sobic007G028100 Sobic007G028100 Sobic001G501000--Sobic007G028100 Sobic005G074500 Sobic005G074500 Sobic001G501000--Sobic005G074500 Sobic006G091100--Sobic001G158500 Sobic006G091100--Sobic003G348400 Sobic001G085900 Sobic001G085900 Sobic006G091100--Sobic001G085900 Sobic006G091100--Sobic003G338400 Sobic006G091100--Sobic004G102400 Sobic001G313500 Sobic001G313500 Sobic006G091100--Sobic001G313500 Sobic006G091100--Sobic006G140000 Sobic006G192700 Sobic006G192700 Sobic006G091100--Sobic006G192700 Sobic006G091100--Sobic010G016400 Sobic001G323000 Sobic001G323000 Sobic001G057800--Sobic001G323000 Sobic002G400000 Sobic002G400000 Sobic001G057800--Sobic002G400000 Sobic002G352700 Sobic002G352700 Sobic001G057800--Sobic002G352700 Sobic002G385900 Sobic002G385900 Sobic001G057800--Sobic002G385900 Sobic001G057800--Sobic001G158500 Sobic004G130900 Sobic004G130900 Sobic001G057800--Sobic004G130900 Sobic010G000900 Sobic010G000900 Sobic001G057800--Sobic010G000900 Sobic010G168600 Sobic010G168600 Sobic001G057800--Sobic010G168600 Sobic009G207000 Sobic009G207000 Sobic001G057800--Sobic009G207000 Sobic003G170400 Sobic003G170400 Sobic004G122300--Sobic003G170400 Sobic002G148000 Sobic002G148000 Sobic004G122300--Sobic002G148000 Sobic003G388500 Sobic003G388500 Sobic004G122300--Sobic003G388500 Sobic004G188000 Sobic004G188000 Sobic004G122300--Sobic004G188000 Sobic004G185400 Sobic004G185400 Sobic004G122300--Sobic004G185400 Sobic004G122300--Sobic003G285300 Sobic006G007800 Sobic006G007800 Sobic004G122300--Sobic006G007800 Sobic004G122100 Sobic004G122100 Sobic004G122300--Sobic004G122100 Sobic009G012900 Sobic009G012900 Sobic004G122300--Sobic009G012900 Sobic001G180900 Sobic001G180900 Sobic002G378800--Sobic001G180900 Sobic002G378800--Sobic001G057800 Sobic006G114800 Sobic006G114800 Sobic002G378800--Sobic006G114800 Sobic002G378800--Sobic001G323000 Sobic006G217700 Sobic006G217700 Sobic002G378800--Sobic006G217700 Sobic008G090600 Sobic008G090600 Sobic002G378800--Sobic008G090600 Sobic002G378800--Sobic004G102400 Sobic006G034000 Sobic006G034000 Sobic002G378800--Sobic006G034000 Sobic009G126900 Sobic009G126900 Sobic002G378800--Sobic009G126900 Sobic006G237900--Sobic006G271200 Sobic004G351300 Sobic004G351300 Sobic006G237900--Sobic004G351300 Sobic006G237900--Sobic001G003000 Sobic005G059600 Sobic005G059600 Sobic006G237900--Sobic005G059600 Sobic006G237900--Sobic010G129600 Sobic010G130200 Sobic010G130200 Sobic006G237900--Sobic010G130200 Sobic010G043400 Sobic010G043400 Sobic006G237900--Sobic010G043400 Sobic006G237900--Sobic001G089800 Sobic001G436900 Sobic001G436900 Sobic006G237900--Sobic001G436900
Octagon: transcription factors


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