Gene annotation
Transcriptome id Sobic.003G286700.1
Synonym HSFC1, AT-HSFC1, Sb03g033750
Functional annotation HSF-type DNA-binding domain containing protein, expressed
UniProt A0A1B6Q5W3
Pfam PF00447
Panther DB PTHR10015 PTHR10015:SF173
NCBI CDD KOG0627; Heat shock transcription factor
KEGG Orthology K09419; heat shock transcription factor, other eukaryote
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G24520 : heat shock transcription factor C1
RAP-DB (Rice) LOC_Os01g53220.1 : HSF-type DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008110 , Zm00025a045167 , Zm00025a028347 , Zm00025a038597 , Zm00025a027698
Brachypodium KQK09598 , KQK12714 , KQJ99265
Barley HORVU4Hr1G090090.2 , HORVU4Hr1G090090.3 , HORVU1Hr1G083420.9 , HORVU1Hr1G083420.4 , HORVU1Hr1G083420.5 , HORVU1Hr1G083420.6 , HORVU1Hr1G083420.7 , HORVU1Hr1G083420.1 , HORVU1Hr1G083420.2 , HORVU1Hr1G083420.3 , HORVU4Hr1G090090.4 , HORVU4Hr1G090090.5 , HORVU1Hr1G083420.16 , HORVU1Hr1G083420.17 , HORVU1Hr1G083420.14 , HORVU1Hr1G083420.15 , HORVU1Hr1G083420.12 , HORVU1Hr1G083420.13 , HORVU1Hr1G083420.10 , HORVU1Hr1G083420.11 , HORVU2Hr1G026020.1 , HORVU1Hr1G083420.8 , HORVU7Hr1G119990.1 , HORVU5Hr1G094380.14 , HORVU4Hr1G090850.1 , HORVU4Hr1G090850.2 , HORVU5Hr1G094380.8 , HORVU5Hr1G094380.5 , HORVU5Hr1G094380.4 , HORVU5Hr1G094380.7 , HORVU5Hr1G094380.6 , HORVU5Hr1G094380.1 , HORVU5Hr1G094380.3 , HORVU3Hr1G069590.2 , HORVU3Hr1G069590.3 , HORVU3Hr1G069590.1 , HORVU3Hr1G069590.4
Wheat TraesCS3B02G314600 , TraesCS3A02G280800 , TraesCS5B02G440700 , TraesCS2B02G171900 , TraesCS3B02G255600 , TraesCS3D02G227200 , TraesCS3D02G280600 , TraesCS5B02G440700 , TraesCS5B02G440700 , TraesCS2D02G151200
Populus -


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cDNA sequences
Sobic.003G286700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G358200 calmodulin-binding protein, putative, expressed -
2 Sobic.003G201600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hypersensitive-induced response protein, putative, expressed -
3 Sobic.002G132500 - -
4 Sobic.008G172800 expressed protein -
5 Sobic.001G200700 expressed protein -
6 Sobic.003G011400 similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed -
7 Sobic.009G046200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed -
8 Sobic.006G104000 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
9 Sobic.009G116700 "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed -
10 Sobic.005G088800 expressed protein -
11 Sobic.001G070401 - -
12 Sobic.003G194400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
13 Sobic.001G409400 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@OsRCI2-5 - Putative low temperature and salt responsive protein, expressed -
14 Sobic.003G278200 potassium channel AKT1, putative, expressed -
15 Sobic.002G141800 expressed protein -
16 Sobic.001G323600 transporter family protein, putative, expressed -
17 Sobic.001G012700 regulatory protein, putative, expressed -
18 Sobic.007G164500 - -
19 Sobic.003G024600 CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
20 Sobic.001G373600 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)


Gene co-expression network
sample Sobic003G286700 Sobic003G286700 Sobic001G358200 Sobic001G358200 Sobic003G286700--Sobic001G358200 Sobic003G201600 Sobic003G201600 Sobic003G286700--Sobic003G201600 Sobic002G132500 Sobic002G132500 Sobic003G286700--Sobic002G132500 Sobic008G172800 Sobic008G172800 Sobic003G286700--Sobic008G172800 Sobic001G200700 Sobic001G200700 Sobic003G286700--Sobic001G200700 Sobic003G011400 Sobic003G011400 Sobic003G286700--Sobic003G011400 Sobic009G046200 Sobic009G046200 Sobic003G286700--Sobic009G046200 Sobic006G104000 Sobic006G104000 Sobic003G286700--Sobic006G104000 Sobic009G116700 Sobic009G116700 Sobic003G286700--Sobic009G116700 Sobic001G358200--Sobic003G201600 Sobic003G015200 Sobic003G015200 Sobic001G358200--Sobic003G015200 Sobic008G081400 Sobic008G081400 Sobic001G358200--Sobic008G081400 Sobic009G015500 Sobic009G015500 Sobic001G358200--Sobic009G015500 Sobic007G058600 Sobic007G058600 Sobic001G358200--Sobic007G058600 Sobic007G156800 Sobic007G156800 Sobic001G358200--Sobic007G156800 Sobic009G006500 Sobic009G006500 Sobic001G358200--Sobic009G006500 Sobic010G070750 Sobic010G070750 Sobic001G358200--Sobic010G070750 Sobic001G358200--Sobic003G286700 Sobic003G201600--Sobic003G011400 Sobic003G201600--Sobic001G200700 Sobic003G194400 Sobic003G194400 Sobic003G201600--Sobic003G194400 Sobic010G101300 Sobic010G101300 Sobic003G201600--Sobic010G101300 Sobic005G183200 Sobic005G183200 Sobic003G201600--Sobic005G183200 Sobic003G201600--Sobic007G156800 Sobic005G088700 Sobic005G088700 Sobic003G201600--Sobic005G088700 Sobic003G292400 Sobic003G292400 Sobic003G201600--Sobic003G292400 Sobic005G064900 Sobic005G064900 Sobic003G201600--Sobic005G064900 Sobic003G278200 Sobic003G278200 Sobic002G132500--Sobic003G278200 Sobic002G132500--Sobic006G104000 Sobic002G132500--Sobic003G011400 Sobic003G024600 Sobic003G024600 Sobic002G132500--Sobic003G024600 Sobic001G466450 Sobic001G466450 Sobic002G132500--Sobic001G466450 Sobic008G172800--Sobic001G466450 Sobic001G373600 Sobic001G373600 Sobic008G172800--Sobic001G373600 Sobic007G164500 Sobic007G164500 Sobic008G172800--Sobic007G164500 Sobic001G200700--Sobic003G011400 Sobic001G200700--Sobic003G194400 Sobic001G200700--Sobic003G292400 Sobic001G200700--Sobic010G101300 Sobic001G200700--Sobic002G132500 Sobic001G200700--Sobic009G046200 Sobic001G200700--Sobic006G104000 Sobic001G200700--Sobic005G183200 Sobic001G200700--Sobic009G116700 Sobic003G011400--Sobic001G200700 Sobic003G011400--Sobic009G116700 Sobic003G011400--Sobic009G046200 Sobic003G011400--Sobic007G164500 Sobic001G323600 Sobic001G323600 Sobic003G011400--Sobic001G323600 Sobic003G011400--Sobic001G373600 Sobic003G011400--Sobic003G024600 Sobic003G011400--Sobic001G466450 Sobic009G046200--Sobic001G373600 Sobic009G046200--Sobic001G466450 Sobic009G046200--Sobic007G164500 Sobic006G104000--Sobic009G046200 Sobic006G104000--Sobic002G132500 Sobic006G104000--Sobic003G011400 Sobic006G104000--Sobic003G024600 Sobic006G104000--Sobic001G466450 Sobic002G141800 Sobic002G141800 Sobic009G116700--Sobic002G141800 Sobic009G116700--Sobic003G011400 Sobic009G116700--Sobic009G046200 Sobic009G116700--Sobic007G164500 Sobic009G116700--Sobic001G373600 Sobic009G116700--Sobic001G466450
Octagon: transcription factors


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