Gene annotation
Transcriptome id Sobic.003G288401.1
Synonym -
Functional annotation -
UniProt A0A1W0VZE8
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF96
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G61550 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g53500.1 : RING-H2 finger protein ATL2M, putative, expressed
MaizeGDB (Corn) Zm00025a027684 , Zm00025a040085 , Zm00025a054235
Brachypodium PNT72790
Barley HORVU3Hr1G069960.1 , HORVU1Hr1G082030.1 , HORVU1Hr1G082030.2
Wheat TraesCS1A02G346900 , TraesCS3B02G313100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G118800 receptor lectin kinase like protein, putative, expressed -
2 Sobic.004G344400 expressed protein -
3 Sobic.003G078300 leucine-rich repeat protein-related, putative, expressed -
4 Sobic.003G197100 beta-galactosidase, putative, expressed -
5 Sobic.001G103800 lecithin cholesterol acyltransferase, putative, expressed K06129: lysophospholipase III
6 Sobic.002G001100 legume lectins beta domain containing protein, putative, expressed -
7 Sobic.001G286400 - -
8 Sobic.001G522300 leucine-rich repeat transmembrane protein kinase, putative, expressed -
9 Sobic.009G099150 - -
10 Sobic.003G291000 protein kinase family protein, putative, expressed -
11 Sobic.009G111500 expressed protein -
12 Sobic.003G041900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
13 Sobic.008G038200 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed -
14 Sobic.010G092400 glycosyl transferase 8 domain containing protein, putative, expressed -
15 Sobic.001G371700 zinc finger protein, putative, expressed -
16 Sobic.002G374600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-oxoacyl-synthase, putative, expressed K09458: fabF, OXSM, 3-oxoacyl-[acyl-carrier-protein] synthase II
17 Sobic.001G429700 expressed protein -
18 Sobic.001G298800 ternary complex factor MIP1, putative, expressed -
19 Sobic.002G045200 protein kinase, putative, expressed -
20 Sobic.006G241800 receptor kinase, putative, expressed -


Gene co-expression network
sample Sobic003G288401 Sobic003G288401 Sobic004G118800 Sobic004G118800 Sobic003G288401--Sobic004G118800 Sobic004G344400 Sobic004G344400 Sobic003G288401--Sobic004G344400 Sobic003G078300 Sobic003G078300 Sobic003G288401--Sobic003G078300 Sobic003G197100 Sobic003G197100 Sobic003G288401--Sobic003G197100 Sobic001G103800 Sobic001G103800 Sobic003G288401--Sobic001G103800 Sobic002G001100 Sobic002G001100 Sobic003G288401--Sobic002G001100 Sobic001G286400 Sobic001G286400 Sobic003G288401--Sobic001G286400 Sobic001G522300 Sobic001G522300 Sobic003G288401--Sobic001G522300 Sobic009G099150 Sobic009G099150 Sobic003G288401--Sobic009G099150 Sobic001G371700 Sobic001G371700 Sobic004G118800--Sobic001G371700 Sobic008G101900 Sobic008G101900 Sobic004G118800--Sobic008G101900 Sobic004G118800--Sobic002G001100 Sobic008G038200 Sobic008G038200 Sobic004G118800--Sobic008G038200 Sobic003G177000 Sobic003G177000 Sobic004G118800--Sobic003G177000 Sobic008G078000 Sobic008G078000 Sobic004G118800--Sobic008G078000 Sobic005G017000 Sobic005G017000 Sobic004G118800--Sobic005G017000 Sobic001G298800 Sobic001G298800 Sobic004G118800--Sobic001G298800 Sobic002G425200 Sobic002G425200 Sobic004G118800--Sobic002G425200 Sobic003G031700 Sobic003G031700 Sobic004G344400--Sobic003G031700 Sobic007G076200 Sobic007G076200 Sobic004G344400--Sobic007G076200 Sobic007G087800 Sobic007G087800 Sobic004G344400--Sobic007G087800 Sobic002G320600 Sobic002G320600 Sobic004G344400--Sobic002G320600 Sobic004G344400--Sobic009G099150 Sobic006G193100 Sobic006G193100 Sobic004G344400--Sobic006G193100 Sobic009G174100 Sobic009G174100 Sobic004G344400--Sobic009G174100 Sobic009G202801 Sobic009G202801 Sobic004G344400--Sobic009G202801 Sobic002G074000 Sobic002G074000 Sobic004G344400--Sobic002G074000 Sobic002G311000 Sobic002G311000 Sobic003G078300--Sobic002G311000 Sobic004G253500 Sobic004G253500 Sobic003G078300--Sobic004G253500 Sobic001G461800 Sobic001G461800 Sobic003G078300--Sobic001G461800 Sobic001G389600 Sobic001G389600 Sobic003G078300--Sobic001G389600 Sobic006G257200 Sobic006G257200 Sobic003G078300--Sobic006G257200 Sobic003G291000 Sobic003G291000 Sobic003G078300--Sobic003G291000 Sobic002G045200 Sobic002G045200 Sobic003G078300--Sobic002G045200 Sobic003G250000 Sobic003G250000 Sobic003G078300--Sobic003G250000 Sobic002G362700 Sobic002G362700 Sobic003G078300--Sobic002G362700 Sobic002G374400 Sobic002G374400 Sobic003G197100--Sobic002G374400 Sobic003G197100--Sobic002G320600 Sobic001G349700 Sobic001G349700 Sobic003G197100--Sobic001G349700 Sobic003G197100--Sobic003G078300 Sobic001G349650 Sobic001G349650 Sobic003G197100--Sobic001G349650 Sobic005G064100 Sobic005G064100 Sobic003G197100--Sobic005G064100 Sobic003G197100--Sobic006G257200 Sobic001G437500 Sobic001G437500 Sobic003G197100--Sobic001G437500 Sobic010G165100 Sobic010G165100 Sobic003G197100--Sobic010G165100 Sobic010G014500 Sobic010G014500 Sobic001G103800--Sobic010G014500 Sobic006G014400 Sobic006G014400 Sobic001G103800--Sobic006G014400 Sobic006G163300 Sobic006G163300 Sobic001G103800--Sobic006G163300 Sobic002G430700 Sobic002G430700 Sobic001G103800--Sobic002G430700 Sobic010G014700 Sobic010G014700 Sobic001G103800--Sobic010G014700 Sobic010G247000 Sobic010G247000 Sobic001G103800--Sobic010G247000 Sobic001G464800 Sobic001G464800 Sobic001G103800--Sobic001G464800 Sobic002G233800 Sobic002G233800 Sobic001G103800--Sobic002G233800 Sobic003G338700 Sobic003G338700 Sobic001G103800--Sobic003G338700 Sobic005G015300 Sobic005G015300 Sobic002G001100--Sobic005G015300 Sobic002G001100--Sobic006G257200 Sobic006G241800 Sobic006G241800 Sobic002G001100--Sobic006G241800 Sobic001G074100 Sobic001G074100 Sobic002G001100--Sobic001G074100 Sobic002G370400 Sobic002G370400 Sobic002G001100--Sobic002G370400 Sobic002G001100--Sobic002G311000 Sobic002G001100--Sobic003G031700 Sobic010G024500 Sobic010G024500 Sobic002G001100--Sobic010G024500 Sobic010G211800 Sobic010G211800 Sobic002G001100--Sobic010G211800 Sobic001G286400--Sobic001G522300 Sobic001G286400--Sobic010G014500 Sobic001G074000 Sobic001G074000 Sobic001G286400--Sobic001G074000 Sobic001G286400--Sobic010G014700 Sobic010G092400 Sobic010G092400 Sobic001G286400--Sobic010G092400 Sobic009G129700 Sobic009G129700 Sobic001G286400--Sobic009G129700 Sobic007G116800 Sobic007G116800 Sobic001G286400--Sobic007G116800 Sobic006G270500 Sobic006G270500 Sobic001G286400--Sobic006G270500 Sobic002G222500 Sobic002G222500 Sobic001G286400--Sobic002G222500 Sobic001G522300--Sobic001G074000 Sobic001G522300--Sobic007G116800 Sobic001G493900 Sobic001G493900 Sobic001G522300--Sobic001G493900 Sobic001G522300--Sobic003G031700 Sobic001G522300--Sobic002G362700 Sobic001G522300--Sobic001G286400 Sobic009G235700 Sobic009G235700 Sobic001G522300--Sobic009G235700 Sobic001G522300--Sobic009G129700 Sobic004G283800 Sobic004G283800 Sobic001G522300--Sobic004G283800 Sobic006G211900 Sobic006G211900 Sobic009G099150--Sobic006G211900 Sobic009G099150--Sobic003G031700 Sobic009G099150--Sobic001G522300 Sobic009G099150--Sobic007G087800 Sobic009G099150--Sobic010G092400 Sobic002G317700 Sobic002G317700 Sobic009G099150--Sobic002G317700 Sobic010G023400 Sobic010G023400 Sobic009G099150--Sobic010G023400 Sobic009G099150--Sobic007G116800 Sobic004G234500 Sobic004G234500 Sobic009G099150--Sobic004G234500
Octagon: transcription factors


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