Gene annotation
Transcriptome id Sobic.003G334300.1
Synonym Sb03g037920
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XN74
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF227
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15010 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g60010.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a039793
Brachypodium PNT73102 , KQK10306
Barley HORVU3Hr1G080110.5 , HORVU3Hr1G080110.3 , HORVU3Hr1G080110.2 , HORVU3Hr1G080110.4
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G210600 RIPER3 - Ripening-related family protein precursor, putative, expressed -
2 Sobic.009G020300 one zinc finger protein, putative, expressed -
3 Sobic.003G092800 white-brown complex homolog protein 7, putative, expressed -
4 Sobic.003G183100 OsFBO6 - F-box and other domain containing protein, expressed -
5 Sobic.002G012000 expressed protein -
6 Sobic.008G002201 - -
7 Sobic.001G538350 - -
8 Sobic.003G044300 D-tyrosyl-tRNA, putative, expressed K07560: dtd, D-aminoacyl-tRNA deacylase
9 Sobic.008G055300 UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed K07441: beta-1,4-N-acetylglucosaminyltransferase
10 Sobic.003G433400 OsDegp14 - Putative Deg protease homologue, expressed -
11 Sobic.010G274800 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
12 Sobic.003G010800 C4-dicarboxylate transporter/malic acid transport protein, expressed -
13 Sobic.002G135000 expressed protein -
14 Sobic.003G291800 hexokinase, putative, expressed K00844: hexokinase
15 Sobic.009G217400 regulator of chromosome condensation, putative, expressed -
16 Sobic.007G182000 hydroxymethylglutaryl-CoA synthase("PubMedID : 26759170,PubMedID : 24597475")@hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
17 Sobic.003G163301 - -
18 Sobic.002G074800 - -
19 Sobic.007G226500 spotted leaf 11, putative, expressed -
20 Sobic.007G099900 - -


Gene co-expression network
sample Sobic003G334300 Sobic003G334300 Sobic001G210600 Sobic001G210600 Sobic003G334300--Sobic001G210600 Sobic009G020300 Sobic009G020300 Sobic003G334300--Sobic009G020300 Sobic003G092800 Sobic003G092800 Sobic003G334300--Sobic003G092800 Sobic003G183100 Sobic003G183100 Sobic003G334300--Sobic003G183100 Sobic002G012000 Sobic002G012000 Sobic003G334300--Sobic002G012000 Sobic008G002201 Sobic008G002201 Sobic003G334300--Sobic008G002201 Sobic001G538350 Sobic001G538350 Sobic003G334300--Sobic001G538350 Sobic003G044300 Sobic003G044300 Sobic003G334300--Sobic003G044300 Sobic008G055300 Sobic008G055300 Sobic003G334300--Sobic008G055300 Sobic001G210600--Sobic008G002201 Sobic001G210600--Sobic003G183100 Sobic001G210600--Sobic009G020300 Sobic001G210600--Sobic001G538350 Sobic001G155100 Sobic001G155100 Sobic001G210600--Sobic001G155100 Sobic005G220680 Sobic005G220680 Sobic001G210600--Sobic005G220680 Sobic007G209900 Sobic007G209900 Sobic001G210600--Sobic007G209900 Sobic010G030500 Sobic010G030500 Sobic001G210600--Sobic010G030500 Sobic004G168150 Sobic004G168150 Sobic001G210600--Sobic004G168150 Sobic009G020300--Sobic001G210600 Sobic009G020300--Sobic003G183100 Sobic009G020300--Sobic008G002201 Sobic009G020300--Sobic001G538350 Sobic009G020300--Sobic007G209900 Sobic009G138401 Sobic009G138401 Sobic009G020300--Sobic009G138401 Sobic010G086100 Sobic010G086100 Sobic009G020300--Sobic010G086100 Sobic008G183600 Sobic008G183600 Sobic009G020300--Sobic008G183600 Sobic009G020300--Sobic001G155100 Sobic009G217400 Sobic009G217400 Sobic003G092800--Sobic009G217400 Sobic003G433400 Sobic003G433400 Sobic003G092800--Sobic003G433400 Sobic002G084800 Sobic002G084800 Sobic003G092800--Sobic002G084800 Sobic008G069300 Sobic008G069300 Sobic003G092800--Sobic008G069300 Sobic007G022600 Sobic007G022600 Sobic003G092800--Sobic007G022600 Sobic003G291800 Sobic003G291800 Sobic003G092800--Sobic003G291800 Sobic009G026300 Sobic009G026300 Sobic003G092800--Sobic009G026300 Sobic007G076400 Sobic007G076400 Sobic003G092800--Sobic007G076400 Sobic006G250800 Sobic006G250800 Sobic003G092800--Sobic006G250800 Sobic003G183100--Sobic001G210600 Sobic003G183100--Sobic008G002201 Sobic003G183100--Sobic009G020300 Sobic003G183100--Sobic001G538350 Sobic003G183100--Sobic001G155100 Sobic003G183100--Sobic005G220680 Sobic003G183100--Sobic009G138401 Sobic003G183100--Sobic010G030500 Sobic001G370200 Sobic001G370200 Sobic003G183100--Sobic001G370200 Sobic002G011900 Sobic002G011900 Sobic002G012000--Sobic002G011900 Sobic001G407300 Sobic001G407300 Sobic002G012000--Sobic001G407300 Sobic007G226500 Sobic007G226500 Sobic002G012000--Sobic007G226500 Sobic010G261900 Sobic010G261900 Sobic002G012000--Sobic010G261900 Sobic009G180600 Sobic009G180600 Sobic002G012000--Sobic009G180600 Sobic009G167400 Sobic009G167400 Sobic002G012000--Sobic009G167400 Sobic002G012000--Sobic008G002201 Sobic004G289100 Sobic004G289100 Sobic002G012000--Sobic004G289100 Sobic006G230000 Sobic006G230000 Sobic002G012000--Sobic006G230000 Sobic008G002201--Sobic001G210600 Sobic008G002201--Sobic001G155100 Sobic008G002201--Sobic003G183100 Sobic008G002201--Sobic005G220680 Sobic008G002201--Sobic010G030500 Sobic008G002201--Sobic004G168150 Sobic008G002201--Sobic001G370200 Sobic007G195000 Sobic007G195000 Sobic008G002201--Sobic007G195000 Sobic008G002201--Sobic001G538350 Sobic001G538350--Sobic008G002201 Sobic001G538350--Sobic001G210600 Sobic001G538350--Sobic003G183100 Sobic001G135700 Sobic001G135700 Sobic001G538350--Sobic001G135700 Sobic001G538350--Sobic005G220680 Sobic001G538350--Sobic001G155100 Sobic001G457500 Sobic001G457500 Sobic001G538350--Sobic001G457500 Sobic007G063800 Sobic007G063800 Sobic001G538350--Sobic007G063800 Sobic001G506400 Sobic001G506400 Sobic001G538350--Sobic001G506400 Sobic003G044300--Sobic003G291800 Sobic006G162400 Sobic006G162400 Sobic003G044300--Sobic006G162400 Sobic010G274800 Sobic010G274800 Sobic003G044300--Sobic010G274800 Sobic009G046900 Sobic009G046900 Sobic003G044300--Sobic009G046900 Sobic003G044300--Sobic008G069300 Sobic002G135000 Sobic002G135000 Sobic003G044300--Sobic002G135000 Sobic010G277700 Sobic010G277700 Sobic003G044300--Sobic010G277700 Sobic006G134500 Sobic006G134500 Sobic003G044300--Sobic006G134500 Sobic001G539400 Sobic001G539400 Sobic003G044300--Sobic001G539400 Sobic005G086250 Sobic005G086250 Sobic008G055300--Sobic005G086250 Sobic003G334200 Sobic003G334200 Sobic008G055300--Sobic003G334200 Sobic009G184900 Sobic009G184900 Sobic008G055300--Sobic009G184900 Sobic003G216300 Sobic003G216300 Sobic008G055300--Sobic003G216300 Sobic005G095680 Sobic005G095680 Sobic008G055300--Sobic005G095680 Sobic009G210000 Sobic009G210000 Sobic008G055300--Sobic009G210000 Sobic008G055300--Sobic003G334300 Sobic003G290800 Sobic003G290800 Sobic008G055300--Sobic003G290800 Sobic003G434800 Sobic003G434800 Sobic008G055300--Sobic003G434800
Octagon: transcription factors


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