Gene annotation
Transcriptome id Sobic.007G226500.2,Sobic.007G226500.1
Synonym PUB15, Sb07g029140
Functional annotation spotted leaf 11, putative, expressed
UniProt C5YJR1 , A0A1Z5RC62
Pfam PF00514 PF04564
Panther DB PTHR23315 PTHR23315:SF83
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G42340 : Plant U-Box 15
RAP-DB (Rice) LOC_Os08g37570.1 : spotted leaf 11, putative, expressed
MaizeGDB (Corn) Zm00025a004944
Brachypodium KQJ98720 , KQJ98660
Barley HORVU7Hr1G061800.1 , HORVU7Hr1G061800.2 , HORVU7Hr1G121810.1 , HORVU7Hr1G121810.2 , HORVU7Hr1G121810.3
Wheat TraesCS7D02G289800 , TraesCS7A02G293900 , TraesCS7B02G186600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G109800 - -
2 Sobic.003G431800 nonsense-mediated mRNA decay protein 3, putative, expressed K07562: nonsense-mediated mRNA decay protein 3
3 Sobic.009G044700 DTA2, putative, expressed -
4 Sobic.006G079800 OsFBX199 - F-box domain containing protein, expressed -
5 Sobic.005G076800 OsFBX412 - F-box domain containing protein, expressed -
6 Sobic.003G024400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
7 Sobic.010G149800 - -
8 Sobic.008G018700 expressed protein -
9 Sobic.002G011900 expressed protein -
10 Sobic.001G307500 - -
11 Sobic.001G257200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
12 Sobic.001G106800 DUF221 domain containing protein, expressed -
13 Sobic.002G095600 metal transporter Nramp6, putative, expressed -
14 Sobic.009G229400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
15 Sobic.009G148600 DUF803 domain containing, putative, expressed -
16 Sobic.004G056800 DEFL1 - Defensin and Defensin-like DEFL family, expressed -
17 Sobic.006G089800 OsFBX103 - F-box domain containing protein, expressed -
18 Sobic.007G018651 - -
19 Sobic.006G204400 maltose excess protein 1-like, chloroplast precursor, putative, expressed -
20 Sobic.002G192800 - -


Gene co-expression network
sample Sobic007G226500 Sobic007G226500 Sobic010G109800 Sobic010G109800 Sobic007G226500--Sobic010G109800 Sobic003G431800 Sobic003G431800 Sobic007G226500--Sobic003G431800 Sobic009G044700 Sobic009G044700 Sobic007G226500--Sobic009G044700 Sobic006G079800 Sobic006G079800 Sobic007G226500--Sobic006G079800 Sobic005G076800 Sobic005G076800 Sobic007G226500--Sobic005G076800 Sobic003G024400 Sobic003G024400 Sobic007G226500--Sobic003G024400 Sobic010G149800 Sobic010G149800 Sobic007G226500--Sobic010G149800 Sobic008G018700 Sobic008G018700 Sobic007G226500--Sobic008G018700 Sobic002G011900 Sobic002G011900 Sobic007G226500--Sobic002G011900 Sobic001G307500 Sobic001G307500 Sobic010G109800--Sobic001G307500 Sobic001G257200 Sobic001G257200 Sobic010G109800--Sobic001G257200 Sobic010G109800--Sobic006G079800 Sobic010G109800--Sobic005G076800 Sobic010G109800--Sobic003G024400 Sobic001G106800 Sobic001G106800 Sobic010G109800--Sobic001G106800 Sobic006G204400 Sobic006G204400 Sobic010G109800--Sobic006G204400 Sobic002G095600 Sobic002G095600 Sobic010G109800--Sobic002G095600 Sobic002G192800 Sobic002G192800 Sobic010G109800--Sobic002G192800 Sobic001G129150 Sobic001G129150 Sobic003G431800--Sobic001G129150 Sobic005G049900 Sobic005G049900 Sobic003G431800--Sobic005G049900 Sobic003G431800--Sobic002G192800 Sobic002G261400 Sobic002G261400 Sobic003G431800--Sobic002G261400 Sobic005G147900 Sobic005G147900 Sobic003G431800--Sobic005G147900 Sobic006G016800 Sobic006G016800 Sobic003G431800--Sobic006G016800 Sobic001G136150 Sobic001G136150 Sobic003G431800--Sobic001G136150 Sobic002G034200 Sobic002G034200 Sobic003G431800--Sobic002G034200 Sobic005G161400 Sobic005G161400 Sobic003G431800--Sobic005G161400 Sobic010G104600 Sobic010G104600 Sobic009G044700--Sobic010G104600 Sobic004G046800 Sobic004G046800 Sobic009G044700--Sobic004G046800 Sobic009G044700--Sobic001G106800 Sobic010G145100 Sobic010G145100 Sobic009G044700--Sobic010G145100 Sobic005G093200 Sobic005G093200 Sobic009G044700--Sobic005G093200 Sobic002G111100 Sobic002G111100 Sobic009G044700--Sobic002G111100 Sobic008G136700 Sobic008G136700 Sobic009G044700--Sobic008G136700 Sobic009G044700--Sobic002G192800 Sobic003G100600 Sobic003G100600 Sobic009G044700--Sobic003G100600 Sobic006G079800--Sobic010G109800 Sobic006G079800--Sobic001G257200 Sobic006G079800--Sobic001G307500 Sobic006G079800--Sobic005G076800 Sobic001G398200 Sobic001G398200 Sobic006G079800--Sobic001G398200 Sobic006G079800--Sobic001G106800 Sobic006G079800--Sobic003G024400 Sobic006G079800--Sobic009G044700 Sobic002G180800 Sobic002G180800 Sobic006G079800--Sobic002G180800 Sobic005G076800--Sobic001G106800 Sobic005G076800--Sobic002G111100 Sobic009G229400 Sobic009G229400 Sobic005G076800--Sobic009G229400 Sobic010G124900 Sobic010G124900 Sobic005G076800--Sobic010G124900 Sobic005G076800--Sobic001G307500 Sobic005G076800--Sobic006G204400 Sobic010G003200 Sobic010G003200 Sobic005G076800--Sobic010G003200 Sobic005G076800--Sobic004G046800 Sobic005G076800--Sobic002G192800 Sobic003G024400--Sobic001G106800 Sobic003G024400--Sobic006G204400 Sobic007G086900 Sobic007G086900 Sobic003G024400--Sobic007G086900 Sobic006G143900 Sobic006G143900 Sobic003G024400--Sobic006G143900 Sobic001G241401 Sobic001G241401 Sobic003G024400--Sobic001G241401 Sobic002G030300 Sobic002G030300 Sobic003G024400--Sobic002G030300 Sobic003G014200 Sobic003G014200 Sobic003G024400--Sobic003G014200 Sobic005G055700 Sobic005G055700 Sobic003G024400--Sobic005G055700 Sobic003G024400--Sobic002G111100 Sobic006G270000 Sobic006G270000 Sobic010G149800--Sobic006G270000 Sobic010G149800--Sobic003G024400 Sobic005G200300 Sobic005G200300 Sobic010G149800--Sobic005G200300 Sobic010G244300 Sobic010G244300 Sobic010G149800--Sobic010G244300 Sobic010G149800--Sobic002G011900 Sobic003G010800 Sobic003G010800 Sobic010G149800--Sobic003G010800 Sobic010G149800--Sobic001G241401 Sobic004G144800 Sobic004G144800 Sobic010G149800--Sobic004G144800 Sobic010G149800--Sobic007G086900 Sobic004G056800 Sobic004G056800 Sobic008G018700--Sobic004G056800 Sobic008G018700--Sobic010G109800 Sobic003G421000 Sobic003G421000 Sobic008G018700--Sobic003G421000 Sobic008G018700--Sobic002G095600 Sobic008G018700--Sobic007G226500 Sobic008G018700--Sobic006G079800 Sobic001G067700 Sobic001G067700 Sobic008G018700--Sobic001G067700 Sobic008G018700--Sobic001G257200 Sobic008G018700--Sobic001G307500 Sobic009G072600 Sobic009G072600 Sobic002G011900--Sobic009G072600 Sobic005G199800 Sobic005G199800 Sobic002G011900--Sobic005G199800 Sobic002G061732 Sobic002G061732 Sobic002G011900--Sobic002G061732 Sobic002G323200 Sobic002G323200 Sobic002G011900--Sobic002G323200 Sobic004G057000 Sobic004G057000 Sobic002G011900--Sobic004G057000 Sobic002G029000 Sobic002G029000 Sobic002G011900--Sobic002G029000 Sobic003G434100 Sobic003G434100 Sobic002G011900--Sobic003G434100 Sobic005G192000 Sobic005G192000 Sobic002G011900--Sobic005G192000 Sobic007G166500 Sobic007G166500 Sobic002G011900--Sobic007G166500
Octagon: transcription factors


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