Gene annotation
Transcriptome id Sobic.002G095600.1
Synonym ATNRAMP6, NRAMP6, Sb02g007890
Functional annotation metal transporter Nramp6, putative, expressed
UniProt C5X2P7
Pfam PF01566
Panther DB PTHR11706 PTHR11706:SF41
NCBI CDD KOG1291; Mn2+ and Fe2+ transporters of the NRAMP family
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT1G15960 : NRAMP metal ion transporter 6
RAP-DB (Rice) LOC_Os07g15460.1 : metal transporter Nramp6, putative, expressed
MaizeGDB (Corn) Zm00025a013619
Brachypodium PNT76769
Barley -
Wheat TraesCS4B02G300600 , TraesCS7D02G324000 , TraesCS4A02G004400 , TraesCS4D02G299400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G257200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
2 Sobic.010G109800 - -
3 Sobic.001G307500 - -
4 Sobic.002G304600 expressed protein -
5 Sobic.005G076800 OsFBX412 - F-box domain containing protein, expressed -
6 Sobic.002G192800 - -
7 Sobic.003G024400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
8 Sobic.006G089800 OsFBX103 - F-box domain containing protein, expressed -
9 Sobic.004G056800 DEFL1 - Defensin and Defensin-like DEFL family, expressed -
10 Sobic.006G079800 OsFBX199 - F-box domain containing protein, expressed -
11 Sobic.001G106800 DUF221 domain containing protein, expressed -
12 Sobic.006G204400 maltose excess protein 1-like, chloroplast precursor, putative, expressed -
13 Sobic.005G135100 expressed protein -
14 Sobic.004G004800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Invertase genes(PubMedID : 24456189)@Up-reguralion under drought(PubMedID : 24916767)@Sugar degradation(PubMedID : 27330561)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
15 Sobic.002G111100 expressed protein -
16 Sobic.001G156800 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
17 Sobic.009G229400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
18 Sobic.004G298200 Plant VAMP (vesicle-associated membrane protein) family protein(PubMedID : 26465154)@MSP domain containing protein, expressed -
19 Sobic.007G086900 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.003G198900 protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic002G095600 Sobic002G095600 Sobic001G257200 Sobic001G257200 Sobic002G095600--Sobic001G257200 Sobic010G109800 Sobic010G109800 Sobic002G095600--Sobic010G109800 Sobic001G307500 Sobic001G307500 Sobic002G095600--Sobic001G307500 Sobic002G304600 Sobic002G304600 Sobic002G095600--Sobic002G304600 Sobic005G076800 Sobic005G076800 Sobic002G095600--Sobic005G076800 Sobic002G192800 Sobic002G192800 Sobic002G095600--Sobic002G192800 Sobic003G024400 Sobic003G024400 Sobic002G095600--Sobic003G024400 Sobic006G089800 Sobic006G089800 Sobic002G095600--Sobic006G089800 Sobic004G056800 Sobic004G056800 Sobic002G095600--Sobic004G056800 Sobic005G135100 Sobic005G135100 Sobic001G257200--Sobic005G135100 Sobic001G106800 Sobic001G106800 Sobic001G257200--Sobic001G106800 Sobic001G257200--Sobic002G192800 Sobic006G204400 Sobic006G204400 Sobic001G257200--Sobic006G204400 Sobic008G136601 Sobic008G136601 Sobic001G257200--Sobic008G136601 Sobic001G257200--Sobic003G024400 Sobic002G074800 Sobic002G074800 Sobic001G257200--Sobic002G074800 Sobic006G001100 Sobic006G001100 Sobic001G257200--Sobic006G001100 Sobic001G257200--Sobic001G307500 Sobic010G109800--Sobic001G307500 Sobic010G109800--Sobic001G257200 Sobic006G079800 Sobic006G079800 Sobic010G109800--Sobic006G079800 Sobic010G109800--Sobic005G076800 Sobic010G109800--Sobic003G024400 Sobic010G109800--Sobic001G106800 Sobic010G109800--Sobic006G204400 Sobic010G109800--Sobic002G095600 Sobic010G109800--Sobic002G192800 Sobic001G307500--Sobic002G192800 Sobic001G307500--Sobic001G106800 Sobic001G307500--Sobic005G076800 Sobic009G229400 Sobic009G229400 Sobic001G307500--Sobic009G229400 Sobic001G194800 Sobic001G194800 Sobic001G307500--Sobic001G194800 Sobic001G156800 Sobic001G156800 Sobic001G307500--Sobic001G156800 Sobic001G253750 Sobic001G253750 Sobic001G307500--Sobic001G253750 Sobic008G030501 Sobic008G030501 Sobic001G307500--Sobic008G030501 Sobic007G081800 Sobic007G081800 Sobic001G307500--Sobic007G081800 Sobic002G304600--Sobic002G095600 Sobic002G304600--Sobic001G257200 Sobic002G304600--Sobic010G109800 Sobic010G104600 Sobic010G104600 Sobic002G304600--Sobic010G104600 Sobic002G304600--Sobic006G079800 Sobic002G304600--Sobic006G089800 Sobic002G304600--Sobic002G192800 Sobic002G304600--Sobic003G024400 Sobic002G304600--Sobic001G307500 Sobic005G076800--Sobic001G106800 Sobic002G111100 Sobic002G111100 Sobic005G076800--Sobic002G111100 Sobic005G076800--Sobic009G229400 Sobic010G124900 Sobic010G124900 Sobic005G076800--Sobic010G124900 Sobic005G076800--Sobic001G307500 Sobic005G076800--Sobic006G204400 Sobic010G003200 Sobic010G003200 Sobic005G076800--Sobic010G003200 Sobic004G046800 Sobic004G046800 Sobic005G076800--Sobic004G046800 Sobic005G076800--Sobic002G192800 Sobic002G384900 Sobic002G384900 Sobic002G192800--Sobic002G384900 Sobic006G017900 Sobic006G017900 Sobic002G192800--Sobic006G017900 Sobic006G017700 Sobic006G017700 Sobic002G192800--Sobic006G017700 Sobic002G182701 Sobic002G182701 Sobic002G192800--Sobic002G182701 Sobic001G211700 Sobic001G211700 Sobic002G192800--Sobic001G211700 Sobic004G100300 Sobic004G100300 Sobic002G192800--Sobic004G100300 Sobic005G221675 Sobic005G221675 Sobic002G192800--Sobic005G221675 Sobic004G046700 Sobic004G046700 Sobic002G192800--Sobic004G046700 Sobic005G140900 Sobic005G140900 Sobic002G192800--Sobic005G140900 Sobic003G024400--Sobic001G106800 Sobic003G024400--Sobic006G204400 Sobic007G086900 Sobic007G086900 Sobic003G024400--Sobic007G086900 Sobic006G143900 Sobic006G143900 Sobic003G024400--Sobic006G143900 Sobic001G241401 Sobic001G241401 Sobic003G024400--Sobic001G241401 Sobic002G030300 Sobic002G030300 Sobic003G024400--Sobic002G030300 Sobic003G014200 Sobic003G014200 Sobic003G024400--Sobic003G014200 Sobic005G055700 Sobic005G055700 Sobic003G024400--Sobic005G055700 Sobic003G024400--Sobic002G111100 Sobic006G089800--Sobic001G106800 Sobic002G429000 Sobic002G429000 Sobic006G089800--Sobic002G429000 Sobic002G021500 Sobic002G021500 Sobic006G089800--Sobic002G021500 Sobic006G018701 Sobic006G018701 Sobic006G089800--Sobic006G018701 Sobic003G343000 Sobic003G343000 Sobic006G089800--Sobic003G343000 Sobic003G343300 Sobic003G343300 Sobic006G089800--Sobic003G343300 Sobic010G026200 Sobic010G026200 Sobic006G089800--Sobic010G026200 Sobic005G039000 Sobic005G039000 Sobic006G089800--Sobic005G039000 Sobic002G406801 Sobic002G406801 Sobic006G089800--Sobic002G406801 Sobic008G018700 Sobic008G018700 Sobic004G056800--Sobic008G018700 Sobic004G056800--Sobic002G095600 Sobic004G056800--Sobic010G109800 Sobic004G056800--Sobic006G079800 Sobic010G034600 Sobic010G034600 Sobic004G056800--Sobic010G034600 Sobic007G226500 Sobic007G226500 Sobic004G056800--Sobic007G226500 Sobic004G056800--Sobic005G076800 Sobic004G056800--Sobic002G304600 Sobic003G421000 Sobic003G421000 Sobic004G056800--Sobic003G421000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.