Gene annotation
Transcriptome id Sobic.001G257200.1
Synonym Sb01g023100
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transcription initiation factor IIE subunit beta, putative, expressed
UniProt C5WMD4
Pfam -
Panther DB PTHR12716 PTHR12716:SF8
NCBI CDD KOG3095; Transcription initiation factor IIE, beta subunit
KEGG Orthology K03137; TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20330 : Transcription initiation factor TFIIE, beta subunit
RAP-DB (Rice) LOC_Os10g25770.1 : transcription initiation factor IIE subunit beta, putative, expressed
MaizeGDB (Corn) Zm00025a009849
Brachypodium KQJ96703
Barley HORVU5Hr1G110960.2 , HORVU5Hr1G110960.1 , HORVU5Hr1G110960.4 , HORVU5Hr1G110960.5 , HORVU5Hr1G110960.3
Wheat TraesCS6B02G269200 , TraesCS6A02G256200 , TraesCS6D02G237400
Populus -


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cDNA sequences
Sobic.001G257200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G135100 expressed protein -
2 Sobic.001G106800 DUF221 domain containing protein, expressed -
3 Sobic.002G192800 - -
4 Sobic.006G204400 maltose excess protein 1-like, chloroplast precursor, putative, expressed -
5 Sobic.008G136601 - -
6 Sobic.003G024400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
7 Sobic.002G074800 - -
8 Sobic.006G001100 ELMO/CED-12 family protein, putative, expressed -
9 Sobic.001G307500 - -
10 Sobic.005G076800 OsFBX412 - F-box domain containing protein, expressed -
11 Sobic.002G111100 expressed protein -
12 Sobic.007G176900 beta-galactosidase precursor, putative, expressed -
13 Sobic.006G143900 transporter family protein, putative, expressed K08150: SLC2A13, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
14 Sobic.002G389600 transcription regulator, putative, expressed -
15 Sobic.001G156800 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
16 Sobic.002G257001 - K13947: auxin efflux carrier family protein
17 Sobic.007G112500 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
18 Sobic.006G027601 - -
19 Sobic.001G024400 pectinesterase inhibitor domain containing protein, expressed -
20 Sobic.006G097400 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3


Gene co-expression network
sample Sobic001G257200 Sobic001G257200 Sobic005G135100 Sobic005G135100 Sobic001G257200--Sobic005G135100 Sobic001G106800 Sobic001G106800 Sobic001G257200--Sobic001G106800 Sobic002G192800 Sobic002G192800 Sobic001G257200--Sobic002G192800 Sobic006G204400 Sobic006G204400 Sobic001G257200--Sobic006G204400 Sobic008G136601 Sobic008G136601 Sobic001G257200--Sobic008G136601 Sobic003G024400 Sobic003G024400 Sobic001G257200--Sobic003G024400 Sobic002G074800 Sobic002G074800 Sobic001G257200--Sobic002G074800 Sobic006G001100 Sobic006G001100 Sobic001G257200--Sobic006G001100 Sobic001G307500 Sobic001G307500 Sobic001G257200--Sobic001G307500 Sobic002G106600 Sobic002G106600 Sobic005G135100--Sobic002G106600 Sobic002G257001 Sobic002G257001 Sobic005G135100--Sobic002G257001 Sobic007G176900 Sobic007G176900 Sobic005G135100--Sobic007G176900 Sobic004G042501 Sobic004G042501 Sobic005G135100--Sobic004G042501 Sobic007G070900 Sobic007G070900 Sobic005G135100--Sobic007G070900 Sobic007G112500 Sobic007G112500 Sobic005G135100--Sobic007G112500 Sobic001G333700 Sobic001G333700 Sobic005G135100--Sobic001G333700 Sobic005G003700 Sobic005G003700 Sobic005G135100--Sobic005G003700 Sobic004G308800 Sobic004G308800 Sobic005G135100--Sobic004G308800 Sobic002G030300 Sobic002G030300 Sobic001G106800--Sobic002G030300 Sobic002G111100 Sobic002G111100 Sobic001G106800--Sobic002G111100 Sobic002G011300 Sobic002G011300 Sobic001G106800--Sobic002G011300 Sobic009G060000 Sobic009G060000 Sobic001G106800--Sobic009G060000 Sobic003G290500 Sobic003G290500 Sobic001G106800--Sobic003G290500 Sobic001G409000 Sobic001G409000 Sobic001G106800--Sobic001G409000 Sobic007G001800 Sobic007G001800 Sobic001G106800--Sobic007G001800 Sobic004G217200 Sobic004G217200 Sobic001G106800--Sobic004G217200 Sobic004G049300 Sobic004G049300 Sobic001G106800--Sobic004G049300 Sobic002G384900 Sobic002G384900 Sobic002G192800--Sobic002G384900 Sobic006G017900 Sobic006G017900 Sobic002G192800--Sobic006G017900 Sobic006G017700 Sobic006G017700 Sobic002G192800--Sobic006G017700 Sobic002G182701 Sobic002G182701 Sobic002G192800--Sobic002G182701 Sobic001G211700 Sobic001G211700 Sobic002G192800--Sobic001G211700 Sobic004G100300 Sobic004G100300 Sobic002G192800--Sobic004G100300 Sobic005G221675 Sobic005G221675 Sobic002G192800--Sobic005G221675 Sobic004G046700 Sobic004G046700 Sobic002G192800--Sobic004G046700 Sobic005G140900 Sobic005G140900 Sobic002G192800--Sobic005G140900 Sobic006G204400--Sobic001G106800 Sobic006G204400--Sobic006G001100 Sobic006G204400--Sobic007G176900 Sobic006G204400--Sobic008G136601 Sobic006G097400 Sobic006G097400 Sobic006G204400--Sobic006G097400 Sobic006G204400--Sobic002G111100 Sobic001G163666 Sobic001G163666 Sobic006G204400--Sobic001G163666 Sobic008G103250 Sobic008G103250 Sobic006G204400--Sobic008G103250 Sobic001G241401 Sobic001G241401 Sobic006G204400--Sobic001G241401 Sobic008G136601--Sobic006G001100 Sobic006G269101 Sobic006G269101 Sobic008G136601--Sobic006G269101 Sobic009G061601 Sobic009G061601 Sobic008G136601--Sobic009G061601 Sobic001G212500 Sobic001G212500 Sobic008G136601--Sobic001G212500 Sobic005G043300 Sobic005G043300 Sobic008G136601--Sobic005G043300 Sobic001G165700 Sobic001G165700 Sobic008G136601--Sobic001G165700 Sobic002G126400 Sobic002G126400 Sobic008G136601--Sobic002G126400 Sobic007G131000 Sobic007G131000 Sobic008G136601--Sobic007G131000 Sobic003G445300 Sobic003G445300 Sobic008G136601--Sobic003G445300 Sobic003G024400--Sobic001G106800 Sobic003G024400--Sobic006G204400 Sobic007G086900 Sobic007G086900 Sobic003G024400--Sobic007G086900 Sobic006G143900 Sobic006G143900 Sobic003G024400--Sobic006G143900 Sobic003G024400--Sobic001G241401 Sobic003G024400--Sobic002G030300 Sobic003G014200 Sobic003G014200 Sobic003G024400--Sobic003G014200 Sobic005G055700 Sobic005G055700 Sobic003G024400--Sobic005G055700 Sobic003G024400--Sobic002G111100 Sobic004G064200 Sobic004G064200 Sobic002G074800--Sobic004G064200 Sobic002G074800--Sobic006G001100 Sobic002G074800--Sobic006G204400 Sobic002G074800--Sobic008G136601 Sobic010G114200 Sobic010G114200 Sobic002G074800--Sobic010G114200 Sobic002G074800--Sobic006G143900 Sobic004G228300 Sobic004G228300 Sobic002G074800--Sobic004G228300 Sobic005G048500 Sobic005G048500 Sobic002G074800--Sobic005G048500 Sobic008G136700 Sobic008G136700 Sobic002G074800--Sobic008G136700 Sobic006G001100--Sobic008G136601 Sobic006G001100--Sobic007G176900 Sobic006G027601 Sobic006G027601 Sobic006G001100--Sobic006G027601 Sobic003G333100 Sobic003G333100 Sobic006G001100--Sobic003G333100 Sobic006G001100--Sobic009G061601 Sobic006G205400 Sobic006G205400 Sobic006G001100--Sobic006G205400 Sobic002G295800 Sobic002G295800 Sobic006G001100--Sobic002G295800 Sobic003G175000 Sobic003G175000 Sobic006G001100--Sobic003G175000 Sobic002G254700 Sobic002G254700 Sobic006G001100--Sobic002G254700 Sobic001G307500--Sobic002G192800 Sobic001G307500--Sobic001G106800 Sobic005G076800 Sobic005G076800 Sobic001G307500--Sobic005G076800 Sobic009G229400 Sobic009G229400 Sobic001G307500--Sobic009G229400 Sobic001G194800 Sobic001G194800 Sobic001G307500--Sobic001G194800 Sobic001G156800 Sobic001G156800 Sobic001G307500--Sobic001G156800 Sobic001G253750 Sobic001G253750 Sobic001G307500--Sobic001G253750 Sobic008G030501 Sobic008G030501 Sobic001G307500--Sobic008G030501 Sobic007G081800 Sobic007G081800 Sobic001G307500--Sobic007G081800
Octagon: transcription factors


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