Gene annotation
Transcriptome id Sobic.006G079800.2,Sobic.006G079800.1
Synonym Sb06g016650
Functional annotation OsFBX199 - F-box domain containing protein, expressed
UniProt A0A1Z5RCW6
Pfam PF12937
Panther DB PTHR32133 PTHR32133:SF109
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G16210 : F-box family protein
RAP-DB (Rice) LOC_Os07g03100.1 : OsFBX212 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU5Hr1G115520.19 , HORVU5Hr1G115520.18 , HORVU5Hr1G115520.13 , HORVU5Hr1G115520.15 , HORVU5Hr1G115520.14 , HORVU5Hr1G115520.8 , HORVU5Hr1G115520.5 , HORVU5Hr1G115520.4 , HORVU5Hr1G115520.1 , HORVU5Hr1G115520.3 , HORVU5Hr1G115520.2 , HORVU5Hr1G115520.20 , HORVU5Hr1G115520.21
Wheat TraesCS3D02G063900 , TraesCS3B02G076600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G109800 - -
2 Sobic.001G257200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
3 Sobic.001G307500 - -
4 Sobic.005G076800 OsFBX412 - F-box domain containing protein, expressed -
5 Sobic.001G398200 MYB family transcription factor, putative, expressed -
6 Sobic.001G106800 DUF221 domain containing protein, expressed -
7 Sobic.003G024400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
8 Sobic.009G044700 DTA2, putative, expressed -
9 Sobic.002G180800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
10 Sobic.002G111100 expressed protein -
11 Sobic.010G145100 - -
12 Sobic.005G093200 - -
13 Sobic.002G074800 - -
14 Sobic.010G124900 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
15 Sobic.002G192800 - -
16 Sobic.006G089800 OsFBX103 - F-box domain containing protein, expressed -
17 Sobic.010G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Caleosin-related family protein(PubMedID : 26320239)@Up-reguralion under heat(PubMedID : 24916767)@caleosin related protein, putative, expressed K17991: peroxygenase
18 Sobic.009G229400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
19 Sobic.002G001200 - -
20 Sobic.006G143900 transporter family protein, putative, expressed K08150: SLC2A13, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13


Gene co-expression network
sample Sobic006G079800 Sobic006G079800 Sobic010G109800 Sobic010G109800 Sobic006G079800--Sobic010G109800 Sobic001G257200 Sobic001G257200 Sobic006G079800--Sobic001G257200 Sobic001G307500 Sobic001G307500 Sobic006G079800--Sobic001G307500 Sobic005G076800 Sobic005G076800 Sobic006G079800--Sobic005G076800 Sobic001G398200 Sobic001G398200 Sobic006G079800--Sobic001G398200 Sobic001G106800 Sobic001G106800 Sobic006G079800--Sobic001G106800 Sobic003G024400 Sobic003G024400 Sobic006G079800--Sobic003G024400 Sobic009G044700 Sobic009G044700 Sobic006G079800--Sobic009G044700 Sobic002G180800 Sobic002G180800 Sobic006G079800--Sobic002G180800 Sobic010G109800--Sobic001G307500 Sobic010G109800--Sobic001G257200 Sobic010G109800--Sobic006G079800 Sobic010G109800--Sobic005G076800 Sobic010G109800--Sobic003G024400 Sobic010G109800--Sobic001G106800 Sobic006G204400 Sobic006G204400 Sobic010G109800--Sobic006G204400 Sobic002G095600 Sobic002G095600 Sobic010G109800--Sobic002G095600 Sobic002G192800 Sobic002G192800 Sobic010G109800--Sobic002G192800 Sobic005G135100 Sobic005G135100 Sobic001G257200--Sobic005G135100 Sobic001G257200--Sobic001G106800 Sobic001G257200--Sobic002G192800 Sobic001G257200--Sobic006G204400 Sobic008G136601 Sobic008G136601 Sobic001G257200--Sobic008G136601 Sobic001G257200--Sobic003G024400 Sobic002G074800 Sobic002G074800 Sobic001G257200--Sobic002G074800 Sobic006G001100 Sobic006G001100 Sobic001G257200--Sobic006G001100 Sobic001G257200--Sobic001G307500 Sobic001G307500--Sobic002G192800 Sobic001G307500--Sobic001G106800 Sobic001G307500--Sobic005G076800 Sobic009G229400 Sobic009G229400 Sobic001G307500--Sobic009G229400 Sobic001G194800 Sobic001G194800 Sobic001G307500--Sobic001G194800 Sobic001G156800 Sobic001G156800 Sobic001G307500--Sobic001G156800 Sobic001G253750 Sobic001G253750 Sobic001G307500--Sobic001G253750 Sobic008G030501 Sobic008G030501 Sobic001G307500--Sobic008G030501 Sobic007G081800 Sobic007G081800 Sobic001G307500--Sobic007G081800 Sobic005G076800--Sobic001G106800 Sobic002G111100 Sobic002G111100 Sobic005G076800--Sobic002G111100 Sobic005G076800--Sobic009G229400 Sobic010G124900 Sobic010G124900 Sobic005G076800--Sobic010G124900 Sobic005G076800--Sobic001G307500 Sobic005G076800--Sobic006G204400 Sobic010G003200 Sobic010G003200 Sobic005G076800--Sobic010G003200 Sobic004G046800 Sobic004G046800 Sobic005G076800--Sobic004G046800 Sobic005G076800--Sobic002G192800 Sobic010G145100 Sobic010G145100 Sobic001G398200--Sobic010G145100 Sobic003G100600 Sobic003G100600 Sobic001G398200--Sobic003G100600 Sobic001G254000 Sobic001G254000 Sobic001G398200--Sobic001G254000 Sobic001G398200--Sobic001G106800 Sobic001G398200--Sobic010G124900 Sobic002G073600 Sobic002G073600 Sobic001G398200--Sobic002G073600 Sobic006G093600 Sobic006G093600 Sobic001G398200--Sobic006G093600 Sobic002G030300 Sobic002G030300 Sobic001G398200--Sobic002G030300 Sobic001G467400 Sobic001G467400 Sobic001G398200--Sobic001G467400 Sobic001G106800--Sobic002G030300 Sobic001G106800--Sobic002G111100 Sobic002G011300 Sobic002G011300 Sobic001G106800--Sobic002G011300 Sobic009G060000 Sobic009G060000 Sobic001G106800--Sobic009G060000 Sobic003G290500 Sobic003G290500 Sobic001G106800--Sobic003G290500 Sobic001G409000 Sobic001G409000 Sobic001G106800--Sobic001G409000 Sobic007G001800 Sobic007G001800 Sobic001G106800--Sobic007G001800 Sobic004G217200 Sobic004G217200 Sobic001G106800--Sobic004G217200 Sobic004G049300 Sobic004G049300 Sobic001G106800--Sobic004G049300 Sobic003G024400--Sobic001G106800 Sobic003G024400--Sobic006G204400 Sobic007G086900 Sobic007G086900 Sobic003G024400--Sobic007G086900 Sobic006G143900 Sobic006G143900 Sobic003G024400--Sobic006G143900 Sobic001G241401 Sobic001G241401 Sobic003G024400--Sobic001G241401 Sobic003G024400--Sobic002G030300 Sobic003G014200 Sobic003G014200 Sobic003G024400--Sobic003G014200 Sobic005G055700 Sobic005G055700 Sobic003G024400--Sobic005G055700 Sobic003G024400--Sobic002G111100 Sobic010G104600 Sobic010G104600 Sobic009G044700--Sobic010G104600 Sobic009G044700--Sobic004G046800 Sobic009G044700--Sobic001G106800 Sobic009G044700--Sobic010G145100 Sobic005G093200 Sobic005G093200 Sobic009G044700--Sobic005G093200 Sobic009G044700--Sobic002G111100 Sobic008G136700 Sobic008G136700 Sobic009G044700--Sobic008G136700 Sobic009G044700--Sobic002G192800 Sobic009G044700--Sobic003G100600 Sobic004G064200 Sobic004G064200 Sobic002G180800--Sobic004G064200 Sobic006G080700 Sobic006G080700 Sobic002G180800--Sobic006G080700 Sobic010G114200 Sobic010G114200 Sobic002G180800--Sobic010G114200 Sobic008G054200 Sobic008G054200 Sobic002G180800--Sobic008G054200 Sobic002G180800--Sobic002G074800 Sobic009G007300 Sobic009G007300 Sobic002G180800--Sobic009G007300 Sobic002G180800--Sobic003G014200 Sobic002G103800 Sobic002G103800 Sobic002G180800--Sobic002G103800 Sobic002G180800--Sobic003G024400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.