Gene annotation
Transcriptome id Sobic.003G340800.1,Sobic.003G340800.2
Synonym Sb03g038470
Functional annotation transmembrane amino acid transporter protein, putative, expressed
UniProt A0A1B6Q6U6 , A0A1B6Q6U7
Pfam PF03222
Panther DB PTHR22950 PTHR22950:SF323
NCBI CDD KOG1305; Amino acid transporter protein
KEGG Orthology -
Gene Ontology GO:0003333; amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G56200 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os01g61044.1,LOC_Os01g61044.2 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a039751
Brachypodium PNT73125 , KQK10382 , KQK10381
Barley HORVU3Hr1G088360.6 , HORVU3Hr1G088360.4 , HORVU3Hr1G088360.5 , HORVU3Hr1G088360.1 , HORVU3Hr1G088360.2 , HORVU3Hr1G088360.3 , HORVU3Hr1G045630.3 , HORVU3Hr1G045630.2 , HORVU3Hr1G045630.4
Wheat TraesCS3A02G346700 , TraesCS3A02G346700 , TraesCS3D02G340400 , TraesCS3D02G340400 , TraesCS3B02G378500 , TraesCS3B02G378500
Populus -


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cDNA sequences
Sobic.003G340800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G201400 seed specific protein Bn15D1B, putative, expressed -
2 Sobic.001G012500 similar to Glutathione S transferase 1(PubMedID : 24655390)@"Glutathione S transferase 1, up-regulated under all the stress condition"(PubMedID : 24655390)@similar to Glutathione S transferase 1(PubMedID : 24655390)@Glutathione S transferase 1(PubMedID : 24655390)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.003G031900 OsGrx_A2 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
4 Sobic.004G099900 early nodulin 93 ENOD93 protein, putative, expressed -
5 Sobic.006G074300 LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.001G012600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.002G379600 phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
8 Sobic.001G366100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
9 Sobic.005G116500 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
10 Sobic.002G366500 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed -
11 Sobic.002G073800 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
12 Sobic.002G421200 IN2-1 protein, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.001G094300 bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase
14 Sobic.007G069200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
15 Sobic.001G012400 "UDP-glucose glucosyltransferase, up-regulated under drought stress "(PubMedID : 24655390)@p-hydroxymandelonitrile-O-glucosyltransferase(PubMedID : 10585420)@-(PubMedID : 27964718)@UDP-glucose:p-hydroxymandelonitrile-O-glucosyltransferase. in vitro substrate regiospecificity(PubMedID : 12946413)@"Cyanohydrin beta-glucosyltransferase, similar to UDP-glucose glucosyltransferase, dhurrin biosynthesis"(PubMedID : 10585420)@cytokinin-O-glucosyltransferase 2, putative, expressed K13030: cyanohydrin beta-glucosyltransferase
16 Sobic.003G254300 peroxiredoxin, putative, expressed -
17 Sobic.002G347300 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
18 Sobic.001G012200 similar to Cytochrome P450 71E1(PubMedID : 24655390)@4-hydroxyphenylacetaldehyde oxime monooxygenase(PubMedID : 27964718)@cytochrome P450, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
19 Sobic.001G170700 OsSub30 - Putative Subtilisin homologue, expressed -
20 Sobic.009G234300 CGMC_MAPKCMGC_2.8 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3


Gene co-expression network
sample Sobic003G340800 Sobic003G340800 Sobic006G201400 Sobic006G201400 Sobic003G340800--Sobic006G201400 Sobic001G012500 Sobic001G012500 Sobic003G340800--Sobic001G012500 Sobic003G031900 Sobic003G031900 Sobic003G340800--Sobic003G031900 Sobic004G099900 Sobic004G099900 Sobic003G340800--Sobic004G099900 Sobic006G074300 Sobic006G074300 Sobic003G340800--Sobic006G074300 Sobic001G012600 Sobic001G012600 Sobic003G340800--Sobic001G012600 Sobic002G379600 Sobic002G379600 Sobic003G340800--Sobic002G379600 Sobic001G366100 Sobic001G366100 Sobic003G340800--Sobic001G366100 Sobic005G116500 Sobic005G116500 Sobic003G340800--Sobic005G116500 Sobic003G254300 Sobic003G254300 Sobic006G201400--Sobic003G254300 Sobic004G024300 Sobic004G024300 Sobic006G201400--Sobic004G024300 Sobic004G220000 Sobic004G220000 Sobic006G201400--Sobic004G220000 Sobic001G351000 Sobic001G351000 Sobic006G201400--Sobic001G351000 Sobic002G073800 Sobic002G073800 Sobic006G201400--Sobic002G073800 Sobic009G212200 Sobic009G212200 Sobic006G201400--Sobic009G212200 Sobic003G306100 Sobic003G306100 Sobic006G201400--Sobic003G306100 Sobic001G304400 Sobic001G304400 Sobic006G201400--Sobic001G304400 Sobic001G432000 Sobic001G432000 Sobic006G201400--Sobic001G432000 Sobic001G012400 Sobic001G012400 Sobic001G012500--Sobic001G012400 Sobic002G347300 Sobic002G347300 Sobic001G012500--Sobic002G347300 Sobic001G012500--Sobic001G012600 Sobic002G338400 Sobic002G338400 Sobic001G012500--Sobic002G338400 Sobic001G035600 Sobic001G035600 Sobic001G012500--Sobic001G035600 Sobic001G012200 Sobic001G012200 Sobic001G012500--Sobic001G012200 Sobic001G012300 Sobic001G012300 Sobic001G012500--Sobic001G012300 Sobic001G012500--Sobic003G340800 Sobic009G232200 Sobic009G232200 Sobic001G012500--Sobic009G232200 Sobic003G031900--Sobic003G340800 Sobic010G165500 Sobic010G165500 Sobic003G031900--Sobic010G165500 Sobic008G077600 Sobic008G077600 Sobic003G031900--Sobic008G077600 Sobic002G311601 Sobic002G311601 Sobic003G031900--Sobic002G311601 Sobic007G069200 Sobic007G069200 Sobic003G031900--Sobic007G069200 Sobic001G357300 Sobic001G357300 Sobic003G031900--Sobic001G357300 Sobic003G082300 Sobic003G082300 Sobic003G031900--Sobic003G082300 Sobic009G243400 Sobic009G243400 Sobic003G031900--Sobic009G243400 Sobic005G133900 Sobic005G133900 Sobic003G031900--Sobic005G133900 Sobic004G099900--Sobic002G073800 Sobic001G478000 Sobic001G478000 Sobic004G099900--Sobic001G478000 Sobic001G388600 Sobic001G388600 Sobic004G099900--Sobic001G388600 Sobic003G244200 Sobic003G244200 Sobic004G099900--Sobic003G244200 Sobic007G100425 Sobic007G100425 Sobic004G099900--Sobic007G100425 Sobic003G216500 Sobic003G216500 Sobic004G099900--Sobic003G216500 Sobic010G103900 Sobic010G103900 Sobic004G099900--Sobic010G103900 Sobic010G018400 Sobic010G018400 Sobic004G099900--Sobic010G018400 Sobic001G005900 Sobic001G005900 Sobic004G099900--Sobic001G005900 Sobic002G366500 Sobic002G366500 Sobic006G074300--Sobic002G366500 Sobic009G222000 Sobic009G222000 Sobic006G074300--Sobic009G222000 Sobic006G074300--Sobic005G116500 Sobic005G224500 Sobic005G224500 Sobic006G074300--Sobic005G224500 Sobic007G130800 Sobic007G130800 Sobic006G074300--Sobic007G130800 Sobic007G195300 Sobic007G195300 Sobic006G074300--Sobic007G195300 Sobic002G278800 Sobic002G278800 Sobic006G074300--Sobic002G278800 Sobic003G131800 Sobic003G131800 Sobic006G074300--Sobic003G131800 Sobic002G278700 Sobic002G278700 Sobic006G074300--Sobic002G278700 Sobic001G012600--Sobic001G012200 Sobic001G334900 Sobic001G334900 Sobic001G012600--Sobic001G334900 Sobic001G012600--Sobic001G012300 Sobic001G012600--Sobic002G347300 Sobic001G012600--Sobic001G012400 Sobic001G012600--Sobic001G012500 Sobic001G012600--Sobic009G232200 Sobic001G345900 Sobic001G345900 Sobic001G012600--Sobic001G345900 Sobic004G257700 Sobic004G257700 Sobic001G012600--Sobic004G257700 Sobic003G333800 Sobic003G333800 Sobic002G379600--Sobic003G333800 Sobic001G410200 Sobic001G410200 Sobic002G379600--Sobic001G410200 Sobic003G410500 Sobic003G410500 Sobic002G379600--Sobic003G410500 Sobic002G128800 Sobic002G128800 Sobic002G379600--Sobic002G128800 Sobic001G459900 Sobic001G459900 Sobic002G379600--Sobic001G459900 Sobic009G101700 Sobic009G101700 Sobic002G379600--Sobic009G101700 Sobic001G040100 Sobic001G040100 Sobic002G379600--Sobic001G040100 Sobic010G023800 Sobic010G023800 Sobic002G379600--Sobic010G023800 Sobic009G179100 Sobic009G179100 Sobic002G379600--Sobic009G179100 Sobic006G148900 Sobic006G148900 Sobic001G366100--Sobic006G148900 Sobic002G421200 Sobic002G421200 Sobic001G366100--Sobic002G421200 Sobic001G185450 Sobic001G185450 Sobic001G366100--Sobic001G185450 Sobic001G366100--Sobic003G340800 Sobic001G366100--Sobic006G201400 Sobic005G179200 Sobic005G179200 Sobic001G366100--Sobic005G179200 Sobic002G251000 Sobic002G251000 Sobic001G366100--Sobic002G251000 Sobic001G366100--Sobic001G351000 Sobic010G084700 Sobic010G084700 Sobic001G366100--Sobic010G084700 Sobic005G116500--Sobic002G366500 Sobic005G116500--Sobic006G074300 Sobic005G116500--Sobic001G012600 Sobic005G116500--Sobic001G012200 Sobic005G116500--Sobic004G257700 Sobic003G134900 Sobic003G134900 Sobic005G116500--Sobic003G134900 Sobic005G116500--Sobic007G195300 Sobic005G116500--Sobic005G224500 Sobic005G116500--Sobic002G347300
Octagon: transcription factors


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