Gene annotation
Transcriptome id Sobic.009G234300.1
Synonym ATMPK20, Sb09g028690, MPK20
Functional annotation CGMC_MAPKCMGC_2.8 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
UniProt C5YVW2
Pfam PF06293
Panther DB PTHR24055 PTHR24055:SF187
NCBI CDD -
KEGG Orthology K04371; ERK, mitogen-activated protein kinase 1/3
Gene Ontology GO:0016773; phosphotransferase activity, alcohol group as acceptor GO:0016020membrane GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT2G42880 : MAP kinase 20
RAP-DB (Rice) LOC_Os05g49140.1 : CGMC_MAPKCMGC_2.8 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
MaizeGDB (Corn) Zm00025a038743 , Zm00025a032798 , Zm00025a036619 , Zm00025a037939 , Zm00025a044590
Brachypodium KQK04843 , KQK04845 , KQK04844 , KQK09033 , KQK09073 , PNT70695 , PNT70696
Barley HORVU1Hr1G088510.11 , HORVU1Hr1G088510.10 , HORVU1Hr1G088510.13 , HORVU1Hr1G088510.12 , HORVU1Hr1G088510.15 , HORVU1Hr1G088510.14 , HORVU1Hr1G088510.17 , HORVU1Hr1G088510.16 , HORVU1Hr1G088510.18 , HORVU1Hr1G088510.5 , HORVU1Hr1G088510.7 , HORVU1Hr1G088510.6 , HORVU1Hr1G088510.1 , HORVU1Hr1G088510.3 , HORVU1Hr1G088510.2 , HORVU1Hr1G088510.9 , HORVU1Hr1G088510.8
Wheat TraesCS3B02G256700 , TraesCS3D02G225600 , TraesCS3A02G228000 , TraesCS1D02G410100 , TraesCS1D02G410100
Populus -


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cDNA sequences
Sobic.009G234300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G073800 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
2 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
3 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
4 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
5 Sobic.001G357300 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
6 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
7 Sobic.010G180400 Fatty acyl-ACP thioesterases B FATB (At)(PubMedID : 27208977)@myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed K10781: fatty acyl-ACP thioesterase B
8 Sobic.007G226100 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
9 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
10 Sobic.001G307900 LYR motif containing protein, putative, expressed K18167: succinate dehydrogenase assembly factor 1
11 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
12 Sobic.010G065400 X0001, putative, expressed -
13 Sobic.004G099900 early nodulin 93 ENOD93 protein, putative, expressed -
14 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
15 Sobic.004G236300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@shikimate kinase, putative, expressed K00891: aroK, shikimate kinase
16 Sobic.005G133900 TPR repeat region family protein, expressed -
17 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
18 Sobic.006G212100 expressed protein -
19 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
20 Sobic.008G188700 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5


Gene co-expression network
sample Sobic009G234300 Sobic009G234300 Sobic002G073800 Sobic002G073800 Sobic009G234300--Sobic002G073800 Sobic002G363100 Sobic002G363100 Sobic009G234300--Sobic002G363100 Sobic003G244200 Sobic003G244200 Sobic009G234300--Sobic003G244200 Sobic003G216500 Sobic003G216500 Sobic009G234300--Sobic003G216500 Sobic001G357300 Sobic001G357300 Sobic009G234300--Sobic001G357300 Sobic004G130100 Sobic004G130100 Sobic009G234300--Sobic004G130100 Sobic010G180400 Sobic010G180400 Sobic009G234300--Sobic010G180400 Sobic007G226100 Sobic007G226100 Sobic009G234300--Sobic007G226100 Sobic001G040800 Sobic001G040800 Sobic009G234300--Sobic001G040800 Sobic010G018400 Sobic010G018400 Sobic002G073800--Sobic010G018400 Sobic009G212200 Sobic009G212200 Sobic002G073800--Sobic009G212200 Sobic008G127500 Sobic008G127500 Sobic002G073800--Sobic008G127500 Sobic009G062000 Sobic009G062000 Sobic002G073800--Sobic009G062000 Sobic001G095632 Sobic001G095632 Sobic002G073800--Sobic001G095632 Sobic001G304400 Sobic001G304400 Sobic002G073800--Sobic001G304400 Sobic009G176000 Sobic009G176000 Sobic002G073800--Sobic009G176000 Sobic002G356400 Sobic002G356400 Sobic002G073800--Sobic002G356400 Sobic001G034700 Sobic001G034700 Sobic002G073800--Sobic001G034700 Sobic009G240900 Sobic009G240900 Sobic002G363100--Sobic009G240900 Sobic002G363100--Sobic001G040800 Sobic009G001400 Sobic009G001400 Sobic002G363100--Sobic009G001400 Sobic002G363100--Sobic001G357300 Sobic007G114200 Sobic007G114200 Sobic002G363100--Sobic007G114200 Sobic009G217900 Sobic009G217900 Sobic002G363100--Sobic009G217900 Sobic001G005900 Sobic001G005900 Sobic002G363100--Sobic001G005900 Sobic002G363100--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic002G363100--Sobic004G327300 Sobic006G002201 Sobic006G002201 Sobic003G244200--Sobic006G002201 Sobic009G093200 Sobic009G093200 Sobic003G244200--Sobic009G093200 Sobic005G133900 Sobic005G133900 Sobic003G244200--Sobic005G133900 Sobic007G161200 Sobic007G161200 Sobic003G244200--Sobic007G161200 Sobic003G244200--Sobic003G216500 Sobic003G244200--Sobic002G363100 Sobic004G099900 Sobic004G099900 Sobic003G244200--Sobic004G099900 Sobic003G244200--Sobic010G180400 Sobic004G082900 Sobic004G082900 Sobic003G244200--Sobic004G082900 Sobic002G410700 Sobic002G410700 Sobic003G216500--Sobic002G410700 Sobic004G182500 Sobic004G182500 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G170300 Sobic003G170300 Sobic003G216500--Sobic003G170300 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic006G020900 Sobic006G020900 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700 Sobic001G357300--Sobic002G363100 Sobic001G357300--Sobic005G133900 Sobic004G057200 Sobic004G057200 Sobic001G357300--Sobic004G057200 Sobic002G306900 Sobic002G306900 Sobic001G357300--Sobic002G306900 Sobic010G277800 Sobic010G277800 Sobic001G357300--Sobic010G277800 Sobic001G357300--Sobic009G217900 Sobic001G357300--Sobic009G001400 Sobic010G019300 Sobic010G019300 Sobic001G357300--Sobic010G019300 Sobic001G357300--Sobic009G240900 Sobic004G130100--Sobic009G217900 Sobic006G232200 Sobic006G232200 Sobic004G130100--Sobic006G232200 Sobic001G501200 Sobic001G501200 Sobic004G130100--Sobic001G501200 Sobic003G337000 Sobic003G337000 Sobic004G130100--Sobic003G337000 Sobic004G130100--Sobic002G363100 Sobic003G124800 Sobic003G124800 Sobic004G130100--Sobic003G124800 Sobic009G198500 Sobic009G198500 Sobic004G130100--Sobic009G198500 Sobic002G428200 Sobic002G428200 Sobic004G130100--Sobic002G428200 Sobic001G428100 Sobic001G428100 Sobic004G130100--Sobic001G428100 Sobic010G180400--Sobic003G244200 Sobic010G024100 Sobic010G024100 Sobic010G180400--Sobic010G024100 Sobic010G180400--Sobic009G234300 Sobic008G051900 Sobic008G051900 Sobic010G180400--Sobic008G051900 Sobic010G180400--Sobic005G133900 Sobic010G180400--Sobic002G306900 Sobic010G180400--Sobic003G216500 Sobic001G307900 Sobic001G307900 Sobic010G180400--Sobic001G307900 Sobic010G180400--Sobic007G161200 Sobic010G065400 Sobic010G065400 Sobic007G226100--Sobic010G065400 Sobic001G529000 Sobic001G529000 Sobic007G226100--Sobic001G529000 Sobic001G439600 Sobic001G439600 Sobic007G226100--Sobic001G439600 Sobic005G157200 Sobic005G157200 Sobic007G226100--Sobic005G157200 Sobic001G315500 Sobic001G315500 Sobic007G226100--Sobic001G315500 Sobic005G111100 Sobic005G111100 Sobic007G226100--Sobic005G111100 Sobic010G193800 Sobic010G193800 Sobic007G226100--Sobic010G193800 Sobic003G055500 Sobic003G055500 Sobic007G226100--Sobic003G055500 Sobic003G329800 Sobic003G329800 Sobic007G226100--Sobic003G329800 Sobic002G194100 Sobic002G194100 Sobic001G040800--Sobic002G194100 Sobic003G253000 Sobic003G253000 Sobic001G040800--Sobic003G253000 Sobic001G040800--Sobic009G001400 Sobic001G040800--Sobic002G363100 Sobic002G202300 Sobic002G202300 Sobic001G040800--Sobic002G202300 Sobic003G130800 Sobic003G130800 Sobic001G040800--Sobic003G130800 Sobic002G355300 Sobic002G355300 Sobic001G040800--Sobic002G355300 Sobic001G040800--Sobic007G114200 Sobic007G088000 Sobic007G088000 Sobic001G040800--Sobic007G088000
Octagon: transcription factors


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