Gene annotation
Transcriptome id Sobic.004G009900.1
Synonym Sb04g001020, WAT1
Functional annotation auxin-induced protein 5NG4, putative, expressed
UniProt C5XS83
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF39
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G75500 : Walls Are Thin 1
RAP-DB (Rice) LOC_Os08g44750.1 : auxin-induced protein 5NG4, putative, expressed
MaizeGDB (Corn) Zm00025a035071 , Zm00025a005578 , Zm00025a030526
Brachypodium KQK02427 , KQJ88791
Barley HORVU7Hr1G059750.2 , HORVU7Hr1G059750.1 , HORVU3Hr1G002710.7 , HORVU3Hr1G002710.6 , HORVU3Hr1G002710.5 , HORVU3Hr1G002710.4 , HORVU3Hr1G002710.3 , HORVU3Hr1G002710.8 , HORVU3Hr1G001040.4 , HORVU3Hr1G001040.2 , HORVU3Hr1G001040.3 , HORVU3Hr1G001040.1
Wheat TraesCS3D02G003600 , TraesCS3D02G027300 , TraesCS7A02G281700 , TraesCS7D02G280200 , TraesCS3B02G006900 , TraesCS3A02G007100 , TraesCS3B02G011600 , TraesCS3A02G019600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G295000 cyclin, putative, expressed -
2 Sobic.006G100501 - -
3 Sobic.003G349400 expressed protein -
4 Sobic.003G132400 OsSubt1 - Putative Subtilisin homologue, expressed -
5 Sobic.001G111300 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
6 Sobic.007G019900 expansin precursor, putative, expressed -
7 Sobic.002G085800 cytokinin-N-glucosyltransferase 1, putative, expressed -
8 Sobic.008G145900 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
9 Sobic.006G150100 Down-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
10 Sobic.009G035900 CHIT10 - Chitinase family protein precursor, expressed -
11 Sobic.002G003700 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.005G127400 expressed protein -
13 Sobic.010G127800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
14 Sobic.010G139100 serine/threonine-protein kinase, putative, expressed -
15 Sobic.005G216700 plant protein of unknown function domain containing protein, expressed -
16 Sobic.002G122400 GLTP domain containing protein, putative, expressed -
17 Sobic.001G318300 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.002G068000 expressed protein -
19 Sobic.004G351200 -(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
20 Sobic.002G329200 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G009900 Sobic004G009900 Sobic001G295000 Sobic001G295000 Sobic004G009900--Sobic001G295000 Sobic006G100501 Sobic006G100501 Sobic004G009900--Sobic006G100501 Sobic003G349400 Sobic003G349400 Sobic004G009900--Sobic003G349400 Sobic003G132400 Sobic003G132400 Sobic004G009900--Sobic003G132400 Sobic001G111300 Sobic001G111300 Sobic004G009900--Sobic001G111300 Sobic007G019900 Sobic007G019900 Sobic004G009900--Sobic007G019900 Sobic002G085800 Sobic002G085800 Sobic004G009900--Sobic002G085800 Sobic008G145900 Sobic008G145900 Sobic004G009900--Sobic008G145900 Sobic006G150100 Sobic006G150100 Sobic004G009900--Sobic006G150100 Sobic006G119000 Sobic006G119000 Sobic001G295000--Sobic006G119000 Sobic003G236600 Sobic003G236600 Sobic001G295000--Sobic003G236600 Sobic001G295000--Sobic006G100501 Sobic003G121100 Sobic003G121100 Sobic001G295000--Sobic003G121100 Sobic006G103300 Sobic006G103300 Sobic001G295000--Sobic006G103300 Sobic005G127400 Sobic005G127400 Sobic001G295000--Sobic005G127400 Sobic006G225500 Sobic006G225500 Sobic001G295000--Sobic006G225500 Sobic001G295000--Sobic003G349400 Sobic009G186500 Sobic009G186500 Sobic001G295000--Sobic009G186500 Sobic006G100501--Sobic006G150100 Sobic002G003700 Sobic002G003700 Sobic006G100501--Sobic002G003700 Sobic004G351200 Sobic004G351200 Sobic006G100501--Sobic004G351200 Sobic006G100501--Sobic003G349400 Sobic006G100501--Sobic009G186500 Sobic006G100501--Sobic002G085800 Sobic006G100501--Sobic005G127400 Sobic010G127800 Sobic010G127800 Sobic006G100501--Sobic010G127800 Sobic006G100501--Sobic006G225500 Sobic003G349400--Sobic005G127400 Sobic010G234500 Sobic010G234500 Sobic003G349400--Sobic010G234500 Sobic002G068000 Sobic002G068000 Sobic003G349400--Sobic002G068000 Sobic003G349400--Sobic006G150100 Sobic002G255000 Sobic002G255000 Sobic003G349400--Sobic002G255000 Sobic003G064800 Sobic003G064800 Sobic003G349400--Sobic003G064800 Sobic010G066800 Sobic010G066800 Sobic003G349400--Sobic010G066800 Sobic004G110700 Sobic004G110700 Sobic003G349400--Sobic004G110700 Sobic007G100700 Sobic007G100700 Sobic003G349400--Sobic007G100700 Sobic001G318300 Sobic001G318300 Sobic003G132400--Sobic001G318300 Sobic003G132400--Sobic002G003700 Sobic002G329200 Sobic002G329200 Sobic003G132400--Sobic002G329200 Sobic003G132400--Sobic006G150100 Sobic003G132400--Sobic005G127400 Sobic009G035900 Sobic009G035900 Sobic003G132400--Sobic009G035900 Sobic003G059000 Sobic003G059000 Sobic003G132400--Sobic003G059000 Sobic003G132400--Sobic003G349400 Sobic006G170600 Sobic006G170600 Sobic003G132400--Sobic006G170600 Sobic010G139100 Sobic010G139100 Sobic001G111300--Sobic010G139100 Sobic001G111300--Sobic004G351200 Sobic005G216700 Sobic005G216700 Sobic001G111300--Sobic005G216700 Sobic001G111300--Sobic002G003700 Sobic002G122400 Sobic002G122400 Sobic001G111300--Sobic002G122400 Sobic001G111300--Sobic006G150100 Sobic009G032900 Sobic009G032900 Sobic001G111300--Sobic009G032900 Sobic010G158400 Sobic010G158400 Sobic001G111300--Sobic010G158400 Sobic001G111300--Sobic003G349400 Sobic006G135500 Sobic006G135500 Sobic007G019900--Sobic006G135500 Sobic007G019900--Sobic008G145900 Sobic001G238100 Sobic001G238100 Sobic007G019900--Sobic001G238100 Sobic007G019900--Sobic010G139100 Sobic002G392100 Sobic002G392100 Sobic007G019900--Sobic002G392100 Sobic007G019900--Sobic005G216700 Sobic007G019900--Sobic002G068000 Sobic007G019900--Sobic009G032900 Sobic002G334000 Sobic002G334000 Sobic007G019900--Sobic002G334000 Sobic002G085800--Sobic003G349400 Sobic002G085800--Sobic010G158400 Sobic002G085800--Sobic009G032900 Sobic002G085800--Sobic005G216700 Sobic002G085800--Sobic002G068000 Sobic002G085800--Sobic004G351200 Sobic002G085800--Sobic010G139100 Sobic002G085800--Sobic006G150100 Sobic002G085800--Sobic010G234500 Sobic008G145900--Sobic007G019900 Sobic008G145900--Sobic002G068000 Sobic008G145900--Sobic009G032900 Sobic008G145900--Sobic001G238100 Sobic008G145900--Sobic003G349400 Sobic007G020200 Sobic007G020200 Sobic008G145900--Sobic007G020200 Sobic008G145900--Sobic010G139100 Sobic008G145900--Sobic006G135500 Sobic008G145900--Sobic005G216700 Sobic006G150100--Sobic003G349400 Sobic006G150100--Sobic005G127400 Sobic006G150100--Sobic002G003700 Sobic006G150100--Sobic004G110700 Sobic006G150100--Sobic006G170600 Sobic006G150100--Sobic002G068000 Sobic006G150100--Sobic010G234500 Sobic006G150100--Sobic010G158400 Sobic006G150100--Sobic006G225500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.