Gene annotation
Transcriptome id Sobic.004G052300.1
Synonym Sb04g004460
Functional annotation -
UniProt C5XVI1
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a019045
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G366600 expressed protein -
2 Sobic.005G029200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
3 Sobic.003G280100 expressed protein -
4 Sobic.010G213700 GDU1, putative, expressed -
5 Sobic.004G148200 Cupin domain containing protein, expressed -
6 Sobic.005G183100 sulfotransferase domain containing protein, expressed -
7 Sobic.002G017800 expressed protein -
8 Sobic.001G331200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
9 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
10 Sobic.003G236450 - -
11 Sobic.004G189500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
13 Sobic.009G077800 expressed protein -
14 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
15 Sobic.006G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
16 Sobic.009G200566 - -
17 Sobic.009G231000 - -
18 Sobic.002G415100 POEI50 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
19 Sobic.002G314700 receptor-like protein kinase, putative, expressed -
20 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G052300 Sobic004G052300 Sobic002G366600 Sobic002G366600 Sobic004G052300--Sobic002G366600 Sobic005G029200 Sobic005G029200 Sobic004G052300--Sobic005G029200 Sobic003G280100 Sobic003G280100 Sobic004G052300--Sobic003G280100 Sobic010G213700 Sobic010G213700 Sobic004G052300--Sobic010G213700 Sobic004G148200 Sobic004G148200 Sobic004G052300--Sobic004G148200 Sobic005G183100 Sobic005G183100 Sobic004G052300--Sobic005G183100 Sobic002G017800 Sobic002G017800 Sobic004G052300--Sobic002G017800 Sobic001G331200 Sobic001G331200 Sobic004G052300--Sobic001G331200 Sobic002G055700 Sobic002G055700 Sobic004G052300--Sobic002G055700 Sobic002G366600--Sobic010G213700 Sobic009G077800 Sobic009G077800 Sobic002G366600--Sobic009G077800 Sobic009G139400 Sobic009G139400 Sobic002G366600--Sobic009G139400 Sobic007G184600 Sobic007G184600 Sobic002G366600--Sobic007G184600 Sobic003G297600 Sobic003G297600 Sobic002G366600--Sobic003G297600 Sobic002G366600--Sobic002G017800 Sobic002G366600--Sobic002G055700 Sobic009G231000 Sobic009G231000 Sobic002G366600--Sobic009G231000 Sobic002G366600--Sobic005G183100 Sobic004G189400 Sobic004G189400 Sobic005G029200--Sobic004G189400 Sobic005G029200--Sobic004G148200 Sobic005G029200--Sobic003G297600 Sobic005G029200--Sobic010G213700 Sobic005G029200--Sobic002G055700 Sobic003G303100 Sobic003G303100 Sobic005G029200--Sobic003G303100 Sobic005G029200--Sobic009G077800 Sobic005G029200--Sobic009G139400 Sobic001G423800 Sobic001G423800 Sobic005G029200--Sobic001G423800 Sobic003G280100--Sobic004G148200 Sobic003G280100--Sobic005G029200 Sobic010G072100 Sobic010G072100 Sobic003G280100--Sobic010G072100 Sobic003G437100 Sobic003G437100 Sobic003G280100--Sobic003G437100 Sobic003G417700 Sobic003G417700 Sobic003G280100--Sobic003G417700 Sobic003G280100--Sobic010G213700 Sobic009G128700 Sobic009G128700 Sobic003G280100--Sobic009G128700 Sobic003G426300 Sobic003G426300 Sobic003G280100--Sobic003G426300 Sobic007G227300 Sobic007G227300 Sobic003G280100--Sobic007G227300 Sobic010G213700--Sobic005G029200 Sobic010G213700--Sobic002G366600 Sobic001G119400 Sobic001G119400 Sobic010G213700--Sobic001G119400 Sobic010G213700--Sobic009G139400 Sobic010G213700--Sobic004G148200 Sobic010G213700--Sobic003G297600 Sobic002G415100 Sobic002G415100 Sobic010G213700--Sobic002G415100 Sobic010G213700--Sobic004G189400 Sobic003G280200 Sobic003G280200 Sobic010G213700--Sobic003G280200 Sobic004G148200--Sobic005G029200 Sobic004G148200--Sobic002G055700 Sobic004G189500 Sobic004G189500 Sobic004G148200--Sobic004G189500 Sobic004G148200--Sobic007G227300 Sobic004G148200--Sobic004G189400 Sobic004G148200--Sobic003G303100 Sobic006G268800 Sobic006G268800 Sobic004G148200--Sobic006G268800 Sobic009G145500 Sobic009G145500 Sobic004G148200--Sobic009G145500 Sobic003G200700 Sobic003G200700 Sobic004G148200--Sobic003G200700 Sobic005G183100--Sobic002G366600 Sobic005G183100--Sobic002G415100 Sobic003G255200 Sobic003G255200 Sobic005G183100--Sobic003G255200 Sobic007G025500 Sobic007G025500 Sobic005G183100--Sobic007G025500 Sobic005G183100--Sobic009G231000 Sobic004G046200 Sobic004G046200 Sobic005G183100--Sobic004G046200 Sobic003G062600 Sobic003G062600 Sobic005G183100--Sobic003G062600 Sobic010G259600 Sobic010G259600 Sobic005G183100--Sobic010G259600 Sobic005G183100--Sobic010G213700 Sobic001G367600 Sobic001G367600 Sobic002G017800--Sobic001G367600 Sobic009G111000 Sobic009G111000 Sobic002G017800--Sobic009G111000 Sobic001G318500 Sobic001G318500 Sobic002G017800--Sobic001G318500 Sobic005G018700 Sobic005G018700 Sobic002G017800--Sobic005G018700 Sobic002G017800--Sobic009G077800 Sobic002G017800--Sobic002G055700 Sobic001G325400 Sobic001G325400 Sobic002G017800--Sobic001G325400 Sobic006G103000 Sobic006G103000 Sobic002G017800--Sobic006G103000 Sobic001G500000 Sobic001G500000 Sobic002G017800--Sobic001G500000 Sobic001G331200--Sobic004G148200 Sobic001G331200--Sobic006G268800 Sobic001G331200--Sobic002G017800 Sobic001G331200--Sobic007G227300 Sobic002G247600 Sobic002G247600 Sobic001G331200--Sobic002G247600 Sobic001G331200--Sobic006G103000 Sobic001G331200--Sobic009G111000 Sobic001G331200--Sobic001G318500 Sobic005G091500 Sobic005G091500 Sobic001G331200--Sobic005G091500 Sobic002G055700--Sobic003G303100 Sobic003G382600 Sobic003G382600 Sobic002G055700--Sobic003G382600 Sobic004G237800 Sobic004G237800 Sobic002G055700--Sobic004G237800 Sobic003G426400 Sobic003G426400 Sobic002G055700--Sobic003G426400 Sobic002G353900 Sobic002G353900 Sobic002G055700--Sobic002G353900 Sobic002G055700--Sobic004G148200 Sobic002G055700--Sobic004G189400 Sobic002G338500 Sobic002G338500 Sobic002G055700--Sobic002G338500 Sobic002G055700--Sobic001G367600
Octagon: transcription factors


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