Gene annotation
Transcriptome id Sobic.004G068350.1
Synonym -
Functional annotation -
UniProt A0A1Z5RLF6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
2 Sobic.001G268850 - -
3 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
4 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
5 Sobic.009G165200 plant-specific domain TIGR01589 family protein, expressed -
6 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
7 Sobic.002G289100 chlorophyll A-B binding protein, putative, expressed -
8 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
9 Sobic.005G152600 - -
10 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
11 Sobic.007G023300 photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed K02723: photosystem II PsbY protein
12 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
13 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
14 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
15 Sobic.003G369000 - -
16 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
17 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
18 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
19 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
20 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1


Gene co-expression network
sample Sobic004G068350 Sobic004G068350 Sobic001G206200 Sobic001G206200 Sobic004G068350--Sobic001G206200 Sobic001G268850 Sobic001G268850 Sobic004G068350--Sobic001G268850 Sobic003G055300 Sobic003G055300 Sobic004G068350--Sobic003G055300 Sobic002G338000 Sobic002G338000 Sobic004G068350--Sobic002G338000 Sobic009G165200 Sobic009G165200 Sobic004G068350--Sobic009G165200 Sobic002G414400 Sobic002G414400 Sobic004G068350--Sobic002G414400 Sobic002G289100 Sobic002G289100 Sobic004G068350--Sobic002G289100 Sobic010G000500 Sobic010G000500 Sobic004G068350--Sobic010G000500 Sobic005G152600 Sobic005G152600 Sobic004G068350--Sobic005G152600 Sobic001G206200--Sobic002G338000 Sobic001G206200--Sobic003G055300 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic002G030200 Sobic002G030200 Sobic001G206200--Sobic002G030200 Sobic009G234600 Sobic009G234600 Sobic001G206200--Sobic009G234600 Sobic004G234200 Sobic004G234200 Sobic001G206200--Sobic004G234200 Sobic001G046900 Sobic001G046900 Sobic001G206200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic001G206200--Sobic002G329600 Sobic001G268850--Sobic003G055300 Sobic001G269000 Sobic001G269000 Sobic001G268850--Sobic001G269000 Sobic001G268850--Sobic001G206200 Sobic001G268850--Sobic009G165200 Sobic001G268850--Sobic002G338000 Sobic001G268850--Sobic002G289100 Sobic002G352100 Sobic002G352100 Sobic001G268850--Sobic002G352100 Sobic001G268850--Sobic010G000500 Sobic001G268850--Sobic002G414400 Sobic003G055300--Sobic002G338000 Sobic003G055300--Sobic001G206200 Sobic003G055300--Sobic010G000500 Sobic003G055300--Sobic002G030200 Sobic003G055300--Sobic001G046900 Sobic003G055300--Sobic002G352100 Sobic005G087000 Sobic005G087000 Sobic003G055300--Sobic005G087000 Sobic009G229700 Sobic009G229700 Sobic003G055300--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic003G055300--Sobic002G242000 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G338000--Sobic002G352100 Sobic002G338000--Sobic002G414400 Sobic001G177000 Sobic001G177000 Sobic002G338000--Sobic001G177000 Sobic002G338000--Sobic009G234600 Sobic009G165200--Sobic002G352100 Sobic009G165200--Sobic009G229700 Sobic009G165200--Sobic005G087000 Sobic009G165200--Sobic005G152600 Sobic010G189300 Sobic010G189300 Sobic009G165200--Sobic010G189300 Sobic001G066600 Sobic001G066600 Sobic009G165200--Sobic001G066600 Sobic009G165200--Sobic003G055300 Sobic009G165200--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic009G165200--Sobic006G073500 Sobic002G414400--Sobic002G338000 Sobic002G414400--Sobic010G000500 Sobic002G414400--Sobic001G206200 Sobic004G193400 Sobic004G193400 Sobic002G414400--Sobic004G193400 Sobic002G414400--Sobic002G030200 Sobic002G414400--Sobic004G234200 Sobic002G414400--Sobic003G055300 Sobic002G297300 Sobic002G297300 Sobic002G414400--Sobic002G297300 Sobic002G288300 Sobic002G288300 Sobic002G414400--Sobic002G288300 Sobic002G289100--Sobic002G288300 Sobic002G289100--Sobic002G352100 Sobic002G289100--Sobic002G338000 Sobic002G289100--Sobic003G055300 Sobic002G289100--Sobic010G000500 Sobic002G289100--Sobic001G206200 Sobic002G289100--Sobic002G414400 Sobic002G289100--Sobic001G268850 Sobic002G289100--Sobic009G165200 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic010G000500--Sobic003G055300 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic006G264900 Sobic006G264900 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic005G152600--Sobic009G229700 Sobic005G152600--Sobic005G087000 Sobic005G152600--Sobic006G073500 Sobic005G152600--Sobic009G165200 Sobic002G033900 Sobic002G033900 Sobic005G152600--Sobic002G033900 Sobic005G152600--Sobic001G046900 Sobic005G152600--Sobic003G055300 Sobic005G152600--Sobic001G066600 Sobic001G274600 Sobic001G274600 Sobic005G152600--Sobic001G274600
Octagon: transcription factors


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