Gene annotation
Transcriptome id Sobic.004G104400.1
Synonym Sb04g008542
Functional annotation berberine and berberine like domain containing protein, expressed
UniProt A0A194YNW9
Pfam PF08031 PF01565
Panther DB PTHR32448 PTHR32448:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G44400 : FAD-binding Berberine family protein
RAP-DB (Rice) LOC_Os02g14090.1 : berberine and berberine like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051097 , Zm00025a020032 , Zm00025a029721 , Zm00025a042344
Brachypodium KQJ81758 , KQJ98133
Barley HORVU4Hr1G062830.1 , HORVU7Hr1G093940.1 , HORVU1Hr1G092680.1 , HORVU7Hr1G089280.1
Wheat TraesCS1A02G424100 , TraesCS1B02G456900 , TraesCS7D02G369200
Populus -


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cDNA sequences
Sobic.004G104400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G136500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.008G049300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ECAGL2 - ECA1 gametogenesis related family protein precursor, expressed -
3 Sobic.006G007450 - -
4 Sobic.K010100 expressed protein -
5 Sobic.010G219800 vacuolar-sorting receptor precursor, putative, expressed -
6 Sobic.005G060400 - -
7 Sobic.006G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
8 Sobic.004G109100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.001G436500 expressed protein -
10 Sobic.001G330925 - -
11 Sobic.005G143000 expressed protein -
12 Sobic.002G417600 ATOFP17/OFP17, putative, expressed -
13 Sobic.002G135600 Cupin domain containing protein, expressed -
14 Sobic.010G004500 expressed protein -
15 Sobic.002G207500 nodulin, putative, expressed -
16 Sobic.001G498100 OsSub27 - Putative Subtilisin homologue, expressed -
17 Sobic.009G115500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.009G239101 - -
19 Sobic.001G448800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lecithin cholesterol acyltransferase, putative, expressed -
20 Sobic.004G106200 receptor-like kinase, putative, expressed -


Gene co-expression network
sample Sobic004G104400 Sobic004G104400 Sobic003G136500 Sobic003G136500 Sobic004G104400--Sobic003G136500 Sobic008G049300 Sobic008G049300 Sobic004G104400--Sobic008G049300 Sobic006G007450 Sobic006G007450 Sobic004G104400--Sobic006G007450 SobicK010100 SobicK010100 Sobic004G104400--SobicK010100 Sobic010G219800 Sobic010G219800 Sobic004G104400--Sobic010G219800 Sobic005G060400 Sobic005G060400 Sobic004G104400--Sobic005G060400 Sobic006G186100 Sobic006G186100 Sobic004G104400--Sobic006G186100 Sobic004G109100 Sobic004G109100 Sobic004G104400--Sobic004G109100 Sobic001G436500 Sobic001G436500 Sobic004G104400--Sobic001G436500 Sobic001G428900 Sobic001G428900 Sobic003G136500--Sobic001G428900 Sobic005G143000 Sobic005G143000 Sobic003G136500--Sobic005G143000 Sobic003G018400 Sobic003G018400 Sobic003G136500--Sobic003G018400 Sobic002G246950 Sobic002G246950 Sobic003G136500--Sobic002G246950 Sobic003G136500--Sobic004G104400 Sobic003G147301 Sobic003G147301 Sobic003G136500--Sobic003G147301 Sobic009G221701 Sobic009G221701 Sobic003G136500--Sobic009G221701 Sobic005G229900 Sobic005G229900 Sobic003G136500--Sobic005G229900 Sobic007G223900 Sobic007G223900 Sobic003G136500--Sobic007G223900 Sobic005G008101 Sobic005G008101 Sobic008G049300--Sobic005G008101 Sobic004G201800 Sobic004G201800 Sobic008G049300--Sobic004G201800 Sobic006G247400 Sobic006G247400 Sobic008G049300--Sobic006G247400 Sobic010G214950 Sobic010G214950 Sobic008G049300--Sobic010G214950 Sobic009G160300 Sobic009G160300 Sobic008G049300--Sobic009G160300 Sobic001G048300 Sobic001G048300 Sobic008G049300--Sobic001G048300 Sobic008G049300--Sobic005G060400 Sobic001G448350 Sobic001G448350 Sobic008G049300--Sobic001G448350 Sobic001G484500 Sobic001G484500 Sobic008G049300--Sobic001G484500 Sobic006G007650 Sobic006G007650 Sobic006G007450--Sobic006G007650 Sobic002G064200 Sobic002G064200 Sobic006G007450--Sobic002G064200 Sobic002G202700 Sobic002G202700 Sobic006G007450--Sobic002G202700 Sobic010G225500 Sobic010G225500 Sobic006G007450--Sobic010G225500 Sobic009G115300 Sobic009G115300 Sobic006G007450--Sobic009G115300 Sobic002G108400 Sobic002G108400 Sobic006G007450--Sobic002G108400 Sobic008G028600 Sobic008G028600 Sobic006G007450--Sobic008G028600 Sobic008G095100 Sobic008G095100 Sobic006G007450--Sobic008G095100 Sobic002G334500 Sobic002G334500 Sobic006G007450--Sobic002G334500 Sobic003G080600 Sobic003G080600 SobicK010100--Sobic003G080600 Sobic002G165020 Sobic002G165020 SobicK010100--Sobic002G165020 SobicK010100--Sobic010G219800 Sobic002G235800 Sobic002G235800 SobicK010100--Sobic002G235800 Sobic005G161900 Sobic005G161900 SobicK010100--Sobic005G161900 Sobic004G106500 Sobic004G106500 SobicK010100--Sobic004G106500 Sobic002G424500 Sobic002G424500 SobicK010100--Sobic002G424500 Sobic002G325500 Sobic002G325500 SobicK010100--Sobic002G325500 Sobic006G246500 Sobic006G246500 SobicK010100--Sobic006G246500 Sobic010G219800--SobicK010100 Sobic010G219800--Sobic005G161900 Sobic010G035900 Sobic010G035900 Sobic010G219800--Sobic010G035900 Sobic010G219800--Sobic004G106500 Sobic009G162700 Sobic009G162700 Sobic010G219800--Sobic009G162700 Sobic007G148300 Sobic007G148300 Sobic010G219800--Sobic007G148300 Sobic005G110508 Sobic005G110508 Sobic010G219800--Sobic005G110508 Sobic005G091900 Sobic005G091900 Sobic010G219800--Sobic005G091900 Sobic010G219800--Sobic006G246500 Sobic005G060400--Sobic004G109100 Sobic005G060400--Sobic008G049300 Sobic005G060400--Sobic004G201800 Sobic003G325000 Sobic003G325000 Sobic005G060400--Sobic003G325000 Sobic004G106200 Sobic004G106200 Sobic005G060400--Sobic004G106200 Sobic002G041900 Sobic002G041900 Sobic005G060400--Sobic002G041900 Sobic002G311900 Sobic002G311900 Sobic005G060400--Sobic002G311900 Sobic005G060400--Sobic005G008101 Sobic005G060400--Sobic009G160300 Sobic001G430000 Sobic001G430000 Sobic006G186100--Sobic001G430000 Sobic008G037200 Sobic008G037200 Sobic006G186100--Sobic008G037200 Sobic003G023666 Sobic003G023666 Sobic006G186100--Sobic003G023666 Sobic002G359800 Sobic002G359800 Sobic006G186100--Sobic002G359800 Sobic003G184500 Sobic003G184500 Sobic006G186100--Sobic003G184500 Sobic002G184800 Sobic002G184800 Sobic006G186100--Sobic002G184800 Sobic001G403200 Sobic001G403200 Sobic006G186100--Sobic001G403200 Sobic001G038400 Sobic001G038400 Sobic006G186100--Sobic001G038400 Sobic010G036200 Sobic010G036200 Sobic006G186100--Sobic010G036200 Sobic004G109100--Sobic004G106200 Sobic009G111800 Sobic009G111800 Sobic004G109100--Sobic009G111800 Sobic010G046900 Sobic010G046900 Sobic004G109100--Sobic010G046900 Sobic001G321700 Sobic001G321700 Sobic004G109100--Sobic001G321700 Sobic002G130200 Sobic002G130200 Sobic004G109100--Sobic002G130200 Sobic004G109100--Sobic005G060400 Sobic004G109100--Sobic003G325000 Sobic004G138400 Sobic004G138400 Sobic004G109100--Sobic004G138400 Sobic004G109100--Sobic005G008101 Sobic001G436500--Sobic008G049300 Sobic001G477100 Sobic001G477100 Sobic001G436500--Sobic001G477100 Sobic001G436500--Sobic004G201800 Sobic010G077200 Sobic010G077200 Sobic001G436500--Sobic010G077200 Sobic001G436500--Sobic004G109100 Sobic001G436500--Sobic005G008101 Sobic004G224400 Sobic004G224400 Sobic001G436500--Sobic004G224400 Sobic001G436500--Sobic002G130200 Sobic001G217800 Sobic001G217800 Sobic001G436500--Sobic001G217800
Octagon: transcription factors


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