Gene annotation
Transcriptome id Sobic.004G110200.1
Synonym Sb04g009000
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XZ31
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G04360 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g15100.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019959
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G319300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
2 Sobic.010G162800 reticuline oxidase-like protein precursor, putative, expressed -
3 Sobic.009G186500 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.001G182200 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.002G392100 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.008G034900 PAN domain-containing protein At5g03700 precursor, putative, expressed -
7 Sobic.001G216500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@nodulin, putative, expressed K07192: flotillin
8 Sobic.001G237800 expansin precursor, putative, expressed -
9 Sobic.007G086300 glycosyl hydrolases family 16, putative, expressed -
10 Sobic.003G400900 keratin, type I cytoskeletal 9, putative, expressed -
11 Sobic.009G219200 expressed protein -
12 Sobic.002G255000 AIR12, putative, expressed -
13 Sobic.003G064800 dirigent, putative, expressed -
14 Sobic.010G128400 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.010G234500 O-methyltransferase, putative, expressed -
16 Sobic.007G019900 expansin precursor, putative, expressed -
17 Sobic.001G229000 xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
18 Sobic.004G306900 amino acid transporter, putative, expressed -
19 Sobic.010G128700 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.002G377700 caltractin, putative, expressed -


Gene co-expression network
sample Sobic004G110200 Sobic004G110200 Sobic001G319300 Sobic001G319300 Sobic004G110200--Sobic001G319300 Sobic010G162800 Sobic010G162800 Sobic004G110200--Sobic010G162800 Sobic009G186500 Sobic009G186500 Sobic004G110200--Sobic009G186500 Sobic001G182200 Sobic001G182200 Sobic004G110200--Sobic001G182200 Sobic002G392100 Sobic002G392100 Sobic004G110200--Sobic002G392100 Sobic008G034900 Sobic008G034900 Sobic004G110200--Sobic008G034900 Sobic001G216500 Sobic001G216500 Sobic004G110200--Sobic001G216500 Sobic001G237800 Sobic001G237800 Sobic004G110200--Sobic001G237800 Sobic007G086300 Sobic007G086300 Sobic004G110200--Sobic007G086300 Sobic001G319300--Sobic009G186500 Sobic001G319300--Sobic007G086300 Sobic002G255000 Sobic002G255000 Sobic001G319300--Sobic002G255000 Sobic001G319300--Sobic008G034900 Sobic001G319300--Sobic004G110200 Sobic003G064800 Sobic003G064800 Sobic001G319300--Sobic003G064800 Sobic001G319300--Sobic002G392100 Sobic003G400900 Sobic003G400900 Sobic001G319300--Sobic003G400900 Sobic001G319300--Sobic001G182200 Sobic010G162800--Sobic001G237800 Sobic001G238000 Sobic001G238000 Sobic010G162800--Sobic001G238000 Sobic010G162800--Sobic003G064800 Sobic001G238200 Sobic001G238200 Sobic010G162800--Sobic001G238200 Sobic010G234500 Sobic010G234500 Sobic010G162800--Sobic010G234500 Sobic009G219200 Sobic009G219200 Sobic010G162800--Sobic009G219200 Sobic005G127400 Sobic005G127400 Sobic010G162800--Sobic005G127400 Sobic003G349400 Sobic003G349400 Sobic010G162800--Sobic003G349400 Sobic004G306900 Sobic004G306900 Sobic010G162800--Sobic004G306900 Sobic006G225500 Sobic006G225500 Sobic009G186500--Sobic006G225500 Sobic009G186500--Sobic002G255000 Sobic009G186500--Sobic001G319300 Sobic009G186500--Sobic005G127400 Sobic009G186500--Sobic010G234500 Sobic009G186500--Sobic003G064800 Sobic003G140700 Sobic003G140700 Sobic009G186500--Sobic003G140700 Sobic009G186500--Sobic001G238200 Sobic009G186500--Sobic003G349400 Sobic001G182200--Sobic001G319300 Sobic001G182200--Sobic008G034900 Sobic002G068000 Sobic002G068000 Sobic001G182200--Sobic002G068000 Sobic001G182200--Sobic001G216500 Sobic004G083500 Sobic004G083500 Sobic001G182200--Sobic004G083500 Sobic001G182200--Sobic009G219200 Sobic001G182200--Sobic010G162800 Sobic001G182200--Sobic003G064800 Sobic010G168400 Sobic010G168400 Sobic001G182200--Sobic010G168400 Sobic002G391400 Sobic002G391400 Sobic002G392100--Sobic002G391400 Sobic007G206800 Sobic007G206800 Sobic002G392100--Sobic007G206800 Sobic002G334000 Sobic002G334000 Sobic002G392100--Sobic002G334000 Sobic002G392100--Sobic007G086300 Sobic006G205700 Sobic006G205700 Sobic002G392100--Sobic006G205700 Sobic002G392100--Sobic008G034900 Sobic003G167300 Sobic003G167300 Sobic002G392100--Sobic003G167300 Sobic010G241900 Sobic010G241900 Sobic002G392100--Sobic010G241900 Sobic001G499900 Sobic001G499900 Sobic002G392100--Sobic001G499900 Sobic008G034900--Sobic007G086300 Sobic008G034900--Sobic002G392100 Sobic009G065800 Sobic009G065800 Sobic008G034900--Sobic009G065800 Sobic008G034900--Sobic001G319300 Sobic008G020000 Sobic008G020000 Sobic008G034900--Sobic008G020000 Sobic008G022100 Sobic008G022100 Sobic008G034900--Sobic008G022100 Sobic008G034900--Sobic003G064800 Sobic008G034900--Sobic003G167300 Sobic008G034900--Sobic002G068000 Sobic001G216500--Sobic002G392100 Sobic001G216500--Sobic007G206800 Sobic005G080600 Sobic005G080600 Sobic001G216500--Sobic005G080600 Sobic001G216500--Sobic002G391400 Sobic001G216500--Sobic001G319300 Sobic005G216700 Sobic005G216700 Sobic001G216500--Sobic005G216700 Sobic001G216500--Sobic002G068000 Sobic001G216500--Sobic001G182200 Sobic001G216500--Sobic006G205700 Sobic001G237800--Sobic009G219200 Sobic001G237800--Sobic010G162800 Sobic001G237800--Sobic003G140700 Sobic001G237800--Sobic002G255000 Sobic001G237800--Sobic005G127400 Sobic001G237800--Sobic001G238000 Sobic001G237800--Sobic003G064800 Sobic001G237800--Sobic001G238200 Sobic009G035900 Sobic009G035900 Sobic001G237800--Sobic009G035900 Sobic004G106100 Sobic004G106100 Sobic007G086300--Sobic004G106100 Sobic007G086300--Sobic004G306900 Sobic007G086300--Sobic003G064800 Sobic007G086300--Sobic006G205700 Sobic003G000100 Sobic003G000100 Sobic007G086300--Sobic003G000100 Sobic007G086300--Sobic002G392100 Sobic007G086300--Sobic001G319300 Sobic007G086300--Sobic008G034900 Sobic003G319400 Sobic003G319400 Sobic007G086300--Sobic003G319400
Octagon: transcription factors


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