Gene annotation
Transcriptome id Sobic.004G127900.1
Synonym Sb04g011030
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt C5Y044
Pfam PF13516
Panther DB PTHR24006 PTHR24006:SF440
NCBI CDD -
KEGG Orthology K10268; F-box and leucine-rich repeat protein 2/20
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G58530 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os02g17990.2 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) Zm00025a019778
Brachypodium PNT66342
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
2 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
3 Sobic.001G199100 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
4 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
5 Sobic.001G137300 GATA zinc finger domain containing protein, expressed -
6 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
7 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
8 Sobic.003G063000 expressed protein -
9 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
10 Sobic.007G224500 expressed protein -
11 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
12 Sobic.003G071500 geranylgeranyl transferase type-1 subunit beta, putative, expressed K11713: geranylgeranyl transferase type-1 subunit beta
13 Sobic.004G183600 molybdenum cofactor biosynthesis protein 1, putative, expressed K03639: moaA, GTP 3',8-cyclase
14 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
15 Sobic.001G334600 OsFBX95 - F-box domain containing protein, expressed -
16 Sobic.001G238700 TRM112, putative, expressed -
17 Sobic.002G364800 COBW domain containing protein, putative, expressed -
18 Sobic.006G192700 expressed protein -
19 Sobic.009G217100 phosphatidylinositol transfer, putative, expressed -
20 Sobic.003G426800 expressed protein -


Gene co-expression network
sample Sobic004G127900 Sobic004G127900 Sobic009G207000 Sobic009G207000 Sobic004G127900--Sobic009G207000 Sobic001G270400 Sobic001G270400 Sobic004G127900--Sobic001G270400 Sobic001G199100 Sobic001G199100 Sobic004G127900--Sobic001G199100 Sobic009G259400 Sobic009G259400 Sobic004G127900--Sobic009G259400 Sobic001G137300 Sobic001G137300 Sobic004G127900--Sobic001G137300 Sobic003G012200 Sobic003G012200 Sobic004G127900--Sobic003G012200 Sobic010G229400 Sobic010G229400 Sobic004G127900--Sobic010G229400 Sobic003G063000 Sobic003G063000 Sobic004G127900--Sobic003G063000 Sobic008G093000 Sobic008G093000 Sobic004G127900--Sobic008G093000 Sobic009G228700 Sobic009G228700 Sobic009G207000--Sobic009G228700 Sobic004G066200 Sobic004G066200 Sobic009G207000--Sobic004G066200 Sobic009G207000--Sobic001G199100 Sobic001G323000 Sobic001G323000 Sobic009G207000--Sobic001G323000 Sobic001G085100 Sobic001G085100 Sobic009G207000--Sobic001G085100 Sobic006G249700 Sobic006G249700 Sobic009G207000--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G207000--Sobic006G148200 Sobic010G000900 Sobic010G000900 Sobic009G207000--Sobic010G000900 Sobic009G207000--Sobic003G012200 Sobic007G024700 Sobic007G024700 Sobic001G270400--Sobic007G024700 Sobic009G094300 Sobic009G094300 Sobic001G270400--Sobic009G094300 Sobic010G205800 Sobic010G205800 Sobic001G270400--Sobic010G205800 Sobic003G109100 Sobic003G109100 Sobic001G270400--Sobic003G109100 Sobic001G137100 Sobic001G137100 Sobic001G270400--Sobic001G137100 Sobic002G270500 Sobic002G270500 Sobic001G270400--Sobic002G270500 Sobic001G121200 Sobic001G121200 Sobic001G270400--Sobic001G121200 Sobic004G052900 Sobic004G052900 Sobic001G270400--Sobic004G052900 Sobic001G270400--Sobic001G199100 Sobic001G199100--Sobic003G012200 Sobic004G275700 Sobic004G275700 Sobic001G199100--Sobic004G275700 Sobic009G075800 Sobic009G075800 Sobic001G199100--Sobic009G075800 Sobic001G199100--Sobic009G207000 Sobic001G199100--Sobic008G093000 Sobic001G091300 Sobic001G091300 Sobic001G199100--Sobic001G091300 Sobic002G226900 Sobic002G226900 Sobic001G199100--Sobic002G226900 Sobic004G206700 Sobic004G206700 Sobic001G199100--Sobic004G206700 Sobic004G348300 Sobic004G348300 Sobic001G199100--Sobic004G348300 Sobic004G121100 Sobic004G121100 Sobic009G259400--Sobic004G121100 Sobic002G395801 Sobic002G395801 Sobic009G259400--Sobic002G395801 Sobic009G259400--Sobic003G012200 Sobic009G217100 Sobic009G217100 Sobic009G259400--Sobic009G217100 Sobic009G259400--Sobic003G063000 Sobic010G251000 Sobic010G251000 Sobic009G259400--Sobic010G251000 Sobic006G200600 Sobic006G200600 Sobic009G259400--Sobic006G200600 Sobic001G281600 Sobic001G281600 Sobic009G259400--Sobic001G281600 Sobic008G179700 Sobic008G179700 Sobic009G259400--Sobic008G179700 Sobic007G007000 Sobic007G007000 Sobic001G137300--Sobic007G007000 Sobic003G344900 Sobic003G344900 Sobic001G137300--Sobic003G344900 Sobic002G352600 Sobic002G352600 Sobic001G137300--Sobic002G352600 Sobic001G137300--Sobic009G217100 Sobic001G137300--Sobic001G137100 Sobic006G226100 Sobic006G226100 Sobic001G137300--Sobic006G226100 Sobic001G137300--Sobic001G121200 Sobic001G137300--Sobic004G348300 Sobic001G137300--Sobic003G063000 Sobic003G012200--Sobic001G199100 Sobic003G012200--Sobic003G344900 Sobic003G012200--Sobic010G000900 Sobic003G012200--Sobic001G085100 Sobic003G012200--Sobic004G348300 Sobic003G012200--Sobic009G075800 Sobic003G012200--Sobic004G275700 Sobic003G012200--Sobic009G259400 Sobic001G047400 Sobic001G047400 Sobic003G012200--Sobic001G047400 Sobic003G139800 Sobic003G139800 Sobic010G229400--Sobic003G139800 Sobic006G215700 Sobic006G215700 Sobic010G229400--Sobic006G215700 Sobic009G222500 Sobic009G222500 Sobic010G229400--Sobic009G222500 Sobic010G229400--Sobic008G093000 Sobic010G164000 Sobic010G164000 Sobic010G229400--Sobic010G164000 Sobic002G385900 Sobic002G385900 Sobic010G229400--Sobic002G385900 Sobic010G229400--Sobic010G000900 Sobic002G166900 Sobic002G166900 Sobic010G229400--Sobic002G166900 Sobic010G229400--Sobic001G199100 Sobic003G063000--Sobic009G259400 Sobic004G006200 Sobic004G006200 Sobic003G063000--Sobic004G006200 Sobic003G063000--Sobic004G348300 Sobic001G000200 Sobic001G000200 Sobic003G063000--Sobic001G000200 Sobic003G063000--Sobic002G352600 Sobic003G063000--Sobic009G217100 Sobic007G062600 Sobic007G062600 Sobic003G063000--Sobic007G062600 Sobic003G063000--Sobic001G121200 Sobic003G063000--Sobic004G066200 Sobic008G093000--Sobic001G199100 Sobic010G064600 Sobic010G064600 Sobic008G093000--Sobic010G064600 Sobic001G301700 Sobic001G301700 Sobic008G093000--Sobic001G301700 Sobic003G312200 Sobic003G312200 Sobic008G093000--Sobic003G312200 Sobic008G093000--Sobic004G275700 Sobic008G093000--Sobic010G229400 Sobic008G093000--Sobic009G207000 Sobic003G087000 Sobic003G087000 Sobic008G093000--Sobic003G087000 Sobic002G244100 Sobic002G244100 Sobic008G093000--Sobic002G244100
Octagon: transcription factors


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