Gene annotation
Transcriptome id Sobic.004G129900.2,Sobic.004G129900.1
Synonym Sb04g011260
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MATE efflux family protein, putative, expressed
UniProt C5Y074 , A0A194YQF8
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF118
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G52450 : MATE efflux family protein
RAP-DB (Rice) LOC_Os10g11354.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a019758 , Zm00025a043409 , Zm00025a019761
Brachypodium KQK04934 , KQK04933
Barley HORVU7Hr1G047080.3 , HORVU7Hr1G047080.4 , HORVU3Hr1G005230.1 , HORVU3Hr1G005230.3 , HORVU3Hr1G005230.2 , HORVU7Hr1G112340.10 , HORVU7Hr1G112340.11 , HORVU7Hr1G112340.12 , HORVU7Hr1G112340.13 , HORVU7Hr1G112340.14 , HORVU7Hr1G112340.15 , HORVU7Hr1G112340.16 , HORVU7Hr1G112340.17 , HORVU7Hr1G047080.24 , HORVU7Hr1G112340.9 , HORVU7Hr1G112340.2 , HORVU7Hr1G112340.3 , HORVU7Hr1G112340.1 , HORVU7Hr1G047080.2 , HORVU7Hr1G112340.7 , HORVU7Hr1G112340.5 , HORVU7Hr1G047080.18 , HORVU7Hr1G047080.19 , HORVU0Hr1G022350.6 , HORVU0Hr1G022350.4 , HORVU0Hr1G022350.5 , HORVU1Hr1G080850.10 , HORVU1Hr1G080850.11 , HORVU1Hr1G080850.8 , HORVU1Hr1G080850.9 , HORVU1Hr1G080850.4 , HORVU1Hr1G080850.5 , HORVU1Hr1G080850.6 , HORVU1Hr1G080850.7 , HORVU1Hr1G080850.1 , HORVU1Hr1G080850.2 , HORVU1Hr1G080850.3 , HORVU7Hr1G112340.8 , HORVU7Hr1G112340.6 , HORVU7Hr1G047080.12 , HORVU7Hr1G047080.10 , HORVU7Hr1G047080.11 , HORVU7Hr1G047080.17 , HORVU0Hr1G022350.2 , HORVU0Hr1G022350.3 , HORVU0Hr1G022350.1 , HORVU7Hr1G047080.6 , HORVU7Hr1G047080.7 , HORVU7Hr1G047080.8 , HORVU6Hr1G091850.1 , HORVU6Hr1G091850.2 , HORVU7Hr1G047080.23 , HORVU7Hr1G047080.22 , HORVU7Hr1G047080.26 , HORVU7Hr1G047080.25
Wheat TraesCS7A02G497300 , TraesCS7A02G033200 , TraesCS5B02G408500 , TraesCS7D02G230900 , TraesCS7D02G230900 , TraesCS7A02G230100 , TraesCS7D02G230800 , TraesCS7B02G196100 , TraesCS7A02G230500 , TraesCS7B02G196000 , TraesCS1D02G357500 , TraesCS7D02G481500 , TraesCS1B02G369300 , TraesCS5D02G413800 , TraesCS7A02G230200
Populus -


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cDNA sequences
Sobic.004G129900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
2 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
3 Sobic.006G076201 - -
4 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
5 Sobic.005G231700 ZOS7-01 - C2H2 zinc finger protein, expressed -
6 Sobic.002G362900 IBS1, putative, expressed -
7 Sobic.005G195600 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
8 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
9 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
10 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
11 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
12 Sobic.007G025800 amino acid transporter, putative, expressed -
13 Sobic.004G245900 - -
14 Sobic.010G265600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Protein of unknown function (DUF581)(PubMedID : 28640841)@DUF581 domain containing protein, expressed -
15 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
16 Sobic.003G424500 Putative uncharacterized protein(PubMedID : 24906815)@expressed protein -
17 Sobic.009G127000 leucine-rich repeat family protein, putative, expressed -
18 Sobic.006G191100 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
19 Sobic.002G325900 aspartic proteinase nepenthesin precursor, putative, expressed -
20 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic004G129900 Sobic004G129900 Sobic004G145200 Sobic004G145200 Sobic004G129900--Sobic004G145200 Sobic006G087900 Sobic006G087900 Sobic004G129900--Sobic006G087900 Sobic006G076201 Sobic006G076201 Sobic004G129900--Sobic006G076201 Sobic001G403600 Sobic001G403600 Sobic004G129900--Sobic001G403600 Sobic005G231700 Sobic005G231700 Sobic004G129900--Sobic005G231700 Sobic002G362900 Sobic002G362900 Sobic004G129900--Sobic002G362900 Sobic005G195600 Sobic005G195600 Sobic004G129900--Sobic005G195600 Sobic009G079300 Sobic009G079300 Sobic004G129900--Sobic009G079300 Sobic003G278700 Sobic003G278700 Sobic004G129900--Sobic003G278700 Sobic010G228000 Sobic010G228000 Sobic004G145200--Sobic010G228000 Sobic008G016900 Sobic008G016900 Sobic004G145200--Sobic008G016900 Sobic007G188100 Sobic007G188100 Sobic004G145200--Sobic007G188100 Sobic004G145200--Sobic006G076201 Sobic010G062800 Sobic010G062800 Sobic004G145200--Sobic010G062800 Sobic004G145200--Sobic002G362900 Sobic001G012800 Sobic001G012800 Sobic004G145200--Sobic001G012800 Sobic002G242500 Sobic002G242500 Sobic004G145200--Sobic002G242500 Sobic002G118600 Sobic002G118600 Sobic004G145200--Sobic002G118600 Sobic006G087900--Sobic005G231700 Sobic006G087900--Sobic002G362900 Sobic003G296700 Sobic003G296700 Sobic006G087900--Sobic003G296700 Sobic001G063600 Sobic001G063600 Sobic006G087900--Sobic001G063600 Sobic006G087900--Sobic006G076201 Sobic010G080400 Sobic010G080400 Sobic006G087900--Sobic010G080400 Sobic002G325900 Sobic002G325900 Sobic006G087900--Sobic002G325900 Sobic001G051800 Sobic001G051800 Sobic006G087900--Sobic001G051800 Sobic009G220200 Sobic009G220200 Sobic006G087900--Sobic009G220200 Sobic006G076201--Sobic006G087900 Sobic006G076201--Sobic004G145200 Sobic006G076201--Sobic002G325900 Sobic010G236500 Sobic010G236500 Sobic006G076201--Sobic010G236500 Sobic006G076201--Sobic005G195600 Sobic006G191100 Sobic006G191100 Sobic006G076201--Sobic006G191100 Sobic003G016600 Sobic003G016600 Sobic006G076201--Sobic003G016600 Sobic006G076201--Sobic002G242500 Sobic006G076201--Sobic002G362900 Sobic001G403600--Sobic002G118600 Sobic001G290400 Sobic001G290400 Sobic001G403600--Sobic001G290400 Sobic001G081600 Sobic001G081600 Sobic001G403600--Sobic001G081600 Sobic001G403600--Sobic010G228000 Sobic004G280800 Sobic004G280800 Sobic001G403600--Sobic004G280800 Sobic001G189700 Sobic001G189700 Sobic001G403600--Sobic001G189700 Sobic007G011000 Sobic007G011000 Sobic001G403600--Sobic007G011000 Sobic005G139700 Sobic005G139700 Sobic001G403600--Sobic005G139700 Sobic001G482700 Sobic001G482700 Sobic001G403600--Sobic001G482700 Sobic005G231700--Sobic006G087900 Sobic005G231700--Sobic001G063600 Sobic005G231700--Sobic002G325900 Sobic005G231700--Sobic003G296700 Sobic005G231700--Sobic010G080400 Sobic009G208800 Sobic009G208800 Sobic005G231700--Sobic009G208800 Sobic008G159100 Sobic008G159100 Sobic005G231700--Sobic008G159100 Sobic002G337800 Sobic002G337800 Sobic005G231700--Sobic002G337800 Sobic004G025000 Sobic004G025000 Sobic005G231700--Sobic004G025000 Sobic002G362900--Sobic007G188100 Sobic002G362900--Sobic006G087900 Sobic002G362900--Sobic009G220200 Sobic002G362900--Sobic009G208800 Sobic002G362900--Sobic004G145200 Sobic002G362900--Sobic005G231700 Sobic002G362900--Sobic008G016900 Sobic002G362900--Sobic010G228000 Sobic001G409900 Sobic001G409900 Sobic002G362900--Sobic001G409900 Sobic005G195600--Sobic006G191100 Sobic005G195600--Sobic006G076201 Sobic006G064800 Sobic006G064800 Sobic005G195600--Sobic006G064800 Sobic005G195600--Sobic006G087900 Sobic005G195600--Sobic003G278700 Sobic005G195600--Sobic002G325900 Sobic004G172100 Sobic004G172100 Sobic005G195600--Sobic004G172100 Sobic005G195600--Sobic004G145200 Sobic007G225300 Sobic007G225300 Sobic005G195600--Sobic007G225300 Sobic009G000200 Sobic009G000200 Sobic009G079300--Sobic009G000200 Sobic004G236550 Sobic004G236550 Sobic009G079300--Sobic004G236550 Sobic003G126300 Sobic003G126300 Sobic009G079300--Sobic003G126300 Sobic003G316300 Sobic003G316300 Sobic009G079300--Sobic003G316300 Sobic007G025800 Sobic007G025800 Sobic009G079300--Sobic007G025800 Sobic001G180900 Sobic001G180900 Sobic009G079300--Sobic001G180900 Sobic003G272400 Sobic003G272400 Sobic009G079300--Sobic003G272400 Sobic009G136100 Sobic009G136100 Sobic009G079300--Sobic009G136100 Sobic003G367300 Sobic003G367300 Sobic009G079300--Sobic003G367300 Sobic009G099000 Sobic009G099000 Sobic003G278700--Sobic009G099000 Sobic001G157400 Sobic001G157400 Sobic003G278700--Sobic001G157400 Sobic001G460300 Sobic001G460300 Sobic003G278700--Sobic001G460300 Sobic001G050800 Sobic001G050800 Sobic003G278700--Sobic001G050800 Sobic003G278700--Sobic005G231700 Sobic009G030200 Sobic009G030200 Sobic003G278700--Sobic009G030200 Sobic010G272101 Sobic010G272101 Sobic003G278700--Sobic010G272101 Sobic003G278700--Sobic001G063600 Sobic003G227600 Sobic003G227600 Sobic003G278700--Sobic003G227600
Octagon: transcription factors


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