Gene annotation
Transcriptome id Sobic.004G162500.1
Synonym Sb04g021420
Functional annotation SAM domain family protein, expressed
UniProt C5XTC2
Pfam PF00536 PF02466
Panther DB PTHR14110 PTHR14110:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G24650 : Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
RAP-DB (Rice) LOC_Os04g33220.1 : SAM domain family protein, expressed
MaizeGDB (Corn) Zm00025a031447 , Zm00025a020513
Brachypodium KQJ82433
Barley HORVU3Hr1G006540.2 , HORVU3Hr1G006540.1 , HORVU2Hr1G072010.2 , HORVU2Hr1G072010.3 , HORVU2Hr1G072010.1 , HORVU2Hr1G072010.4 , HORVU2Hr1G072010.5
Wheat TraesCS2D02G289200 , TraesCS2D02G289200 , TraesCS2B02G307600 , TraesCS2A02G291200 , TraesCS3D02G039800 , TraesCS3A02G040500
Populus -


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cDNA sequences
Sobic.004G162500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G086800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G032200 transporter, major facilitator superfamily domain containing protein, expressed -
3 Sobic.002G189600 expressed protein -
4 Sobic.003G044300 D-tyrosyl-tRNA, putative, expressed K07560: dtd, D-aminoacyl-tRNA deacylase
5 Sobic.009G160500 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
6 Sobic.002G138300 expressed protein -
7 Sobic.008G011300 GIY-YIG catalytic domain containing protein, putative, expressed K15078: structure-specific endonuclease subunit SLX1
8 Sobic.008G130800 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
9 Sobic.003G392600 expressed protein -
10 Sobic.009G026300 expressed protein K17815: exonuclease V
11 Sobic.003G242700 - -
12 Sobic.009G260700 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
13 Sobic.001G415700 expressed protein -
14 Sobic.003G202100 Uncharacterized ACR, COG1565 containing protein, putative, expressed K18164: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7
15 Sobic.010G109400 acylphosphatase, putative, expressed K01512: acylphosphatase
16 Sobic.003G092800 white-brown complex homolog protein 7, putative, expressed -
17 Sobic.007G090537 - K10956: protein transport protein SEC61 subunit alpha
18 Sobic.001G285500 - -
19 Sobic.001G178100 inositol-1-monophosphatase, putative, expressed K10047: inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase
20 Sobic.006G162400 expressed protein -


Gene co-expression network
sample Sobic004G162500 Sobic004G162500 Sobic006G086800 Sobic006G086800 Sobic004G162500--Sobic006G086800 Sobic001G032200 Sobic001G032200 Sobic004G162500--Sobic001G032200 Sobic002G189600 Sobic002G189600 Sobic004G162500--Sobic002G189600 Sobic003G044300 Sobic003G044300 Sobic004G162500--Sobic003G044300 Sobic009G160500 Sobic009G160500 Sobic004G162500--Sobic009G160500 Sobic002G138300 Sobic002G138300 Sobic004G162500--Sobic002G138300 Sobic008G011300 Sobic008G011300 Sobic004G162500--Sobic008G011300 Sobic008G130800 Sobic008G130800 Sobic004G162500--Sobic008G130800 Sobic003G392600 Sobic003G392600 Sobic004G162500--Sobic003G392600 Sobic006G086800--Sobic008G130800 Sobic006G086800--Sobic004G162500 Sobic008G030600 Sobic008G030600 Sobic006G086800--Sobic008G030600 Sobic003G047900 Sobic003G047900 Sobic006G086800--Sobic003G047900 Sobic009G130800 Sobic009G130800 Sobic006G086800--Sobic009G130800 Sobic003G149000 Sobic003G149000 Sobic006G086800--Sobic003G149000 Sobic001G285500 Sobic001G285500 Sobic006G086800--Sobic001G285500 Sobic009G070700 Sobic009G070700 Sobic006G086800--Sobic009G070700 Sobic007G090537 Sobic007G090537 Sobic006G086800--Sobic007G090537 Sobic001G032200--Sobic008G011300 Sobic010G204900 Sobic010G204900 Sobic001G032200--Sobic010G204900 Sobic007G211800 Sobic007G211800 Sobic001G032200--Sobic007G211800 Sobic001G495400 Sobic001G495400 Sobic001G032200--Sobic001G495400 Sobic001G032200--Sobic004G162500 Sobic001G032200--Sobic009G160500 Sobic001G346600 Sobic001G346600 Sobic001G032200--Sobic001G346600 Sobic001G032200--Sobic002G138300 Sobic001G025800 Sobic001G025800 Sobic001G032200--Sobic001G025800 Sobic010G221600 Sobic010G221600 Sobic002G189600--Sobic010G221600 Sobic007G026200 Sobic007G026200 Sobic002G189600--Sobic007G026200 Sobic001G478600 Sobic001G478600 Sobic002G189600--Sobic001G478600 Sobic002G189600--Sobic004G162500 Sobic002G189600--Sobic009G160500 Sobic003G292300 Sobic003G292300 Sobic002G189600--Sobic003G292300 Sobic002G189600--Sobic008G011300 Sobic001G441200 Sobic001G441200 Sobic002G189600--Sobic001G441200 Sobic007G211100 Sobic007G211100 Sobic002G189600--Sobic007G211100 Sobic003G291800 Sobic003G291800 Sobic003G044300--Sobic003G291800 Sobic006G162400 Sobic006G162400 Sobic003G044300--Sobic006G162400 Sobic010G274800 Sobic010G274800 Sobic003G044300--Sobic010G274800 Sobic009G046900 Sobic009G046900 Sobic003G044300--Sobic009G046900 Sobic008G069300 Sobic008G069300 Sobic003G044300--Sobic008G069300 Sobic002G135000 Sobic002G135000 Sobic003G044300--Sobic002G135000 Sobic010G277700 Sobic010G277700 Sobic003G044300--Sobic010G277700 Sobic006G134500 Sobic006G134500 Sobic003G044300--Sobic006G134500 Sobic001G539400 Sobic001G539400 Sobic003G044300--Sobic001G539400 Sobic002G386900 Sobic002G386900 Sobic009G160500--Sobic002G386900 Sobic009G160500--Sobic001G032200 Sobic009G160500--Sobic002G189600 Sobic002G151000 Sobic002G151000 Sobic009G160500--Sobic002G151000 Sobic009G160500--Sobic004G162500 Sobic003G304400 Sobic003G304400 Sobic009G160500--Sobic003G304400 Sobic003G113300 Sobic003G113300 Sobic009G160500--Sobic003G113300 Sobic002G398700 Sobic002G398700 Sobic009G160500--Sobic002G398700 Sobic009G160500--Sobic001G495400 Sobic002G138300--Sobic001G032200 Sobic002G138300--Sobic006G162400 Sobic009G260700 Sobic009G260700 Sobic002G138300--Sobic009G260700 Sobic006G000900 Sobic006G000900 Sobic002G138300--Sobic006G000900 Sobic006G170900 Sobic006G170900 Sobic002G138300--Sobic006G170900 Sobic006G103700 Sobic006G103700 Sobic002G138300--Sobic006G103700 Sobic002G138300--Sobic010G274800 Sobic002G138300--Sobic004G162500 Sobic002G138300--Sobic003G044300 Sobic008G011300--Sobic001G032200 Sobic008G011300--Sobic007G211800 Sobic008G011300--Sobic010G204900 Sobic008G011300--Sobic001G478600 Sobic001G063800 Sobic001G063800 Sobic008G011300--Sobic001G063800 Sobic008G011300--Sobic001G495400 Sobic008G011300--Sobic010G221600 Sobic008G011300--Sobic002G189600 Sobic002G388000 Sobic002G388000 Sobic008G011300--Sobic002G388000 Sobic010G130601 Sobic010G130601 Sobic008G130800--Sobic010G130601 Sobic008G130800--Sobic006G086800 Sobic001G285600 Sobic001G285600 Sobic008G130800--Sobic001G285600 Sobic008G130800--Sobic001G285500 Sobic001G225900 Sobic001G225900 Sobic008G130800--Sobic001G225900 Sobic010G124900 Sobic010G124900 Sobic008G130800--Sobic010G124900 Sobic008G130800--Sobic002G135000 Sobic008G130800--Sobic004G162500 Sobic008G130800--Sobic010G277700 Sobic003G202100 Sobic003G202100 Sobic003G392600--Sobic003G202100 Sobic006G020900 Sobic006G020900 Sobic003G392600--Sobic006G020900 Sobic001G304000 Sobic001G304000 Sobic003G392600--Sobic001G304000 Sobic003G388700 Sobic003G388700 Sobic003G392600--Sobic003G388700 Sobic002G071100 Sobic002G071100 Sobic003G392600--Sobic002G071100 Sobic005G018800 Sobic005G018800 Sobic003G392600--Sobic005G018800 Sobic003G326900 Sobic003G326900 Sobic003G392600--Sobic003G326900 Sobic003G392600--Sobic009G260700 Sobic001G537100 Sobic001G537100 Sobic003G392600--Sobic001G537100
Octagon: transcription factors


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