Gene annotation
Transcriptome id Sobic.004G226100.1
Synonym Sb04g027050
Functional annotation RIPER1 - Ripening-related family protein precursor, expressed
UniProt C5XY81
Pfam -
Panther DB PTHR33191 PTHR33191:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os02g42450.1 : RIPER1 - Ripening-related family protein precursor, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G034000 expressed protein -
2 Sobic.001G354400 O-methyltransferase, putative, expressed -
3 Sobic.001G316400 heavy metal-associated domain containing protein, expressed -
4 Sobic.007G092700 - -
5 Sobic.002G122800 expressed protein -
6 Sobic.003G203200 hypothetical protein -
7 Sobic.001G069900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
8 Sobic.006G181300 Polyphenol oxidas(PubMedID : 28818380)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@polyphenol oxidase, putative, expressed K00422: polyphenol oxidase
9 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
10 Sobic.003G252300 universal stress protein domain containing protein, putative, expressed -
11 Sobic.006G091700 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
12 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
13 Sobic.009G114000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
14 Sobic.004G071200 limonoid UDP-glucosyltransferase, putative, expressed -
15 Sobic.006G258800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
16 Sobic.005G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
17 Sobic.003G244600 similar to PRm 3(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
18 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
19 Sobic.009G203700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA18 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
20 Sobic.008G074400 glutathione S-transferase, putative, expressed K01800: maiA, maleylacetoacetate isomerase


Gene co-expression network
sample Sobic004G226100 Sobic004G226100 Sobic007G034000 Sobic007G034000 Sobic004G226100--Sobic007G034000 Sobic001G354400 Sobic001G354400 Sobic004G226100--Sobic001G354400 Sobic001G316400 Sobic001G316400 Sobic004G226100--Sobic001G316400 Sobic007G092700 Sobic007G092700 Sobic004G226100--Sobic007G092700 Sobic002G122800 Sobic002G122800 Sobic004G226100--Sobic002G122800 Sobic003G203200 Sobic003G203200 Sobic004G226100--Sobic003G203200 Sobic001G069900 Sobic001G069900 Sobic004G226100--Sobic001G069900 Sobic006G181300 Sobic006G181300 Sobic004G226100--Sobic006G181300 Sobic002G085300 Sobic002G085300 Sobic004G226100--Sobic002G085300 Sobic007G034000--Sobic007G092700 Sobic007G034000--Sobic006G181300 Sobic002G210800 Sobic002G210800 Sobic007G034000--Sobic002G210800 Sobic001G359500 Sobic001G359500 Sobic007G034000--Sobic001G359500 Sobic007G034000--Sobic001G069900 Sobic006G082000 Sobic006G082000 Sobic007G034000--Sobic006G082000 Sobic005G221000 Sobic005G221000 Sobic007G034000--Sobic005G221000 Sobic001G015500 Sobic001G015500 Sobic007G034000--Sobic001G015500 Sobic001G504900 Sobic001G504900 Sobic007G034000--Sobic001G504900 Sobic001G354400--Sobic003G203200 Sobic001G354400--Sobic002G122800 Sobic001G354400--Sobic001G316400 Sobic001G354400--Sobic006G181300 Sobic006G246600 Sobic006G246600 Sobic001G354400--Sobic006G246600 Sobic001G354400--Sobic004G226100 Sobic005G169400 Sobic005G169400 Sobic001G354400--Sobic005G169400 Sobic009G114000 Sobic009G114000 Sobic001G354400--Sobic009G114000 Sobic008G048900 Sobic008G048900 Sobic001G354400--Sobic008G048900 Sobic001G316400--Sobic003G203200 Sobic001G316400--Sobic002G122800 Sobic008G074400 Sobic008G074400 Sobic001G316400--Sobic008G074400 Sobic001G316400--Sobic006G181300 Sobic001G316400--Sobic001G504900 Sobic001G316400--Sobic002G085300 Sobic001G316400--Sobic009G114000 Sobic006G091700 Sobic006G091700 Sobic001G316400--Sobic006G091700 Sobic001G316400--Sobic001G354400 Sobic007G092700--Sobic007G034000 Sobic007G092700--Sobic001G015500 Sobic007G092700--Sobic001G069900 Sobic007G186200 Sobic007G186200 Sobic007G092700--Sobic007G186200 Sobic008G189200 Sobic008G189200 Sobic007G092700--Sobic008G189200 Sobic008G079300 Sobic008G079300 Sobic007G092700--Sobic008G079300 Sobic001G207400 Sobic001G207400 Sobic007G092700--Sobic001G207400 Sobic003G428400 Sobic003G428400 Sobic007G092700--Sobic003G428400 Sobic007G092700--Sobic006G181300 Sobic002G122800--Sobic009G114000 Sobic003G111200 Sobic003G111200 Sobic002G122800--Sobic003G111200 Sobic002G122800--Sobic003G203200 Sobic002G122800--Sobic005G169400 Sobic002G122800--Sobic001G316400 Sobic002G122800--Sobic001G354400 Sobic002G122800--Sobic006G181300 Sobic002G122800--Sobic006G091700 Sobic002G122800--Sobic002G085300 Sobic003G203200--Sobic002G122800 Sobic003G203200--Sobic001G354400 Sobic003G203200--Sobic001G316400 Sobic005G043900 Sobic005G043900 Sobic003G203200--Sobic005G043900 Sobic003G203200--Sobic009G114000 Sobic003G203200--Sobic006G091700 Sobic003G203200--Sobic002G085300 Sobic003G203200--Sobic006G181300 Sobic003G203200--Sobic006G246600 Sobic001G069900--Sobic001G015500 Sobic001G069900--Sobic006G181300 Sobic003G087200 Sobic003G087200 Sobic001G069900--Sobic003G087200 Sobic001G069900--Sobic006G091700 Sobic001G069900--Sobic009G114000 Sobic001G150600 Sobic001G150600 Sobic001G069900--Sobic001G150600 Sobic005G178100 Sobic005G178100 Sobic001G069900--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic001G069900--Sobic009G034700 Sobic001G325200 Sobic001G325200 Sobic001G069900--Sobic001G325200 Sobic006G181300--Sobic001G069900 Sobic006G181300--Sobic003G087200 Sobic006G181300--Sobic009G114000 Sobic006G181300--Sobic006G091700 Sobic004G321800 Sobic004G321800 Sobic006G181300--Sobic004G321800 Sobic009G207600 Sobic009G207600 Sobic006G181300--Sobic009G207600 Sobic006G181300--Sobic001G015500 Sobic006G181300--Sobic008G079300 Sobic006G181300--Sobic001G150600 Sobic002G085300--Sobic006G091700 Sobic002G085300--Sobic009G114000 Sobic002G420700 Sobic002G420700 Sobic002G085300--Sobic002G420700 Sobic002G085300--Sobic003G087200 Sobic002G085300--Sobic001G015500 Sobic002G085300--Sobic001G150600 Sobic008G153400 Sobic008G153400 Sobic002G085300--Sobic008G153400 Sobic002G085300--Sobic001G069900 Sobic001G150650 Sobic001G150650 Sobic002G085300--Sobic001G150650
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.