Gene annotation
Transcriptome id Sobic.009G203700.1
Synonym PAP1, SbIAA22, auxin/indole-3-acetic acid (Aux/IAA), IAA26, Sb09g026100
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment" (PubMedID : 20499123)
OsIAA18 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt A0A1B6P9N0
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF32
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G16500 : phytochrome-associated protein 1
RAP-DB (Rice) LOC_Os05g44810.1 : OsIAA18 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a044311
Brachypodium KQK09659 , KQK09658 , KQK09662 , KQK09663 , KQK09660 , KQK09661 , KQK09664 , PNT72821 , PNT72820 , PNT72822 , PNT72819
Barley -
Wheat TraesCS1B02G356600 , TraesCS3D02G276600 , TraesCS3B02G310500 , TraesCS3A02G276500 , TraesCS1D02G345400 , TraesCS1D02G345400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G252300 universal stress protein domain containing protein, putative, expressed -
2 Sobic.007G034000 expressed protein -
3 Sobic.007G092700 - -
4 Sobic.004G226100 RIPER1 - Ripening-related family protein precursor, expressed -
5 Sobic.010G255500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@exostosin, putative, expressed -
6 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
7 Sobic.002G210800 hypothetical protein -
8 Sobic.002G249200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin efflux carrier component, putative, expressed -
9 Sobic.005G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
10 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
11 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
12 Sobic.002G420700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
13 Sobic.008G190900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
14 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.001G298500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
17 Sobic.003G005600 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
18 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.001G504900 pheophorbide a oxygenase, chloroplast precursor, putative, expressed K13071: PAO, pheophorbide a oxygenase
20 Sobic.007G225900 OsWAK13 - OsWAK receptor-like protein kinase, expressed -


Gene co-expression network
sample Sobic009G203700 Sobic009G203700 Sobic003G252300 Sobic003G252300 Sobic009G203700--Sobic003G252300 Sobic007G034000 Sobic007G034000 Sobic009G203700--Sobic007G034000 Sobic007G092700 Sobic007G092700 Sobic009G203700--Sobic007G092700 Sobic004G226100 Sobic004G226100 Sobic009G203700--Sobic004G226100 Sobic010G255500 Sobic010G255500 Sobic009G203700--Sobic010G255500 Sobic002G274800 Sobic002G274800 Sobic009G203700--Sobic002G274800 Sobic002G210800 Sobic002G210800 Sobic009G203700--Sobic002G210800 Sobic002G249200 Sobic002G249200 Sobic009G203700--Sobic002G249200 Sobic005G016800 Sobic005G016800 Sobic009G203700--Sobic005G016800 Sobic003G252300--Sobic002G274800 Sobic005G216000 Sobic005G216000 Sobic003G252300--Sobic005G216000 Sobic003G105800 Sobic003G105800 Sobic003G252300--Sobic003G105800 Sobic006G115300 Sobic006G115300 Sobic003G252300--Sobic006G115300 Sobic008G190900 Sobic008G190900 Sobic003G252300--Sobic008G190900 Sobic004G162400 Sobic004G162400 Sobic003G252300--Sobic004G162400 Sobic008G189200 Sobic008G189200 Sobic003G252300--Sobic008G189200 Sobic007G225900 Sobic007G225900 Sobic003G252300--Sobic007G225900 Sobic001G092000 Sobic001G092000 Sobic003G252300--Sobic001G092000 Sobic007G034000--Sobic007G092700 Sobic006G181300 Sobic006G181300 Sobic007G034000--Sobic006G181300 Sobic007G034000--Sobic002G210800 Sobic001G359500 Sobic001G359500 Sobic007G034000--Sobic001G359500 Sobic001G069900 Sobic001G069900 Sobic007G034000--Sobic001G069900 Sobic006G082000 Sobic006G082000 Sobic007G034000--Sobic006G082000 Sobic005G221000 Sobic005G221000 Sobic007G034000--Sobic005G221000 Sobic001G015500 Sobic001G015500 Sobic007G034000--Sobic001G015500 Sobic001G504900 Sobic001G504900 Sobic007G034000--Sobic001G504900 Sobic007G092700--Sobic007G034000 Sobic007G092700--Sobic001G015500 Sobic007G092700--Sobic001G069900 Sobic007G186200 Sobic007G186200 Sobic007G092700--Sobic007G186200 Sobic007G092700--Sobic008G189200 Sobic008G079300 Sobic008G079300 Sobic007G092700--Sobic008G079300 Sobic001G207400 Sobic001G207400 Sobic007G092700--Sobic001G207400 Sobic003G428400 Sobic003G428400 Sobic007G092700--Sobic003G428400 Sobic007G092700--Sobic006G181300 Sobic004G226100--Sobic007G034000 Sobic001G354400 Sobic001G354400 Sobic004G226100--Sobic001G354400 Sobic001G316400 Sobic001G316400 Sobic004G226100--Sobic001G316400 Sobic004G226100--Sobic007G092700 Sobic002G122800 Sobic002G122800 Sobic004G226100--Sobic002G122800 Sobic003G203200 Sobic003G203200 Sobic004G226100--Sobic003G203200 Sobic004G226100--Sobic001G069900 Sobic004G226100--Sobic006G181300 Sobic002G085300 Sobic002G085300 Sobic004G226100--Sobic002G085300 Sobic010G255500--Sobic003G252300 Sobic010G255500--Sobic006G115300 Sobic010G255500--Sobic008G079300 Sobic010G255500--Sobic002G274800 Sobic009G097300 Sobic009G097300 Sobic010G255500--Sobic009G097300 Sobic010G124800 Sobic010G124800 Sobic010G255500--Sobic010G124800 Sobic004G113300 Sobic004G113300 Sobic010G255500--Sobic004G113300 Sobic003G281900 Sobic003G281900 Sobic010G255500--Sobic003G281900 Sobic003G184900 Sobic003G184900 Sobic010G255500--Sobic003G184900 Sobic010G043400 Sobic010G043400 Sobic002G274800--Sobic010G043400 Sobic002G274800--Sobic007G225900 Sobic002G274800--Sobic003G252300 Sobic002G274800--Sobic003G105800 Sobic002G274800--Sobic002G249200 Sobic002G274800--Sobic008G189200 Sobic009G161000 Sobic009G161000 Sobic002G274800--Sobic009G161000 Sobic004G124200 Sobic004G124200 Sobic002G274800--Sobic004G124200 Sobic001G282600 Sobic001G282600 Sobic002G274800--Sobic001G282600 Sobic002G210800--Sobic005G221000 Sobic002G210800--Sobic007G034000 Sobic010G212350 Sobic010G212350 Sobic002G210800--Sobic010G212350 Sobic003G315500 Sobic003G315500 Sobic002G210800--Sobic003G315500 Sobic002G210800--Sobic001G069900 Sobic002G210800--Sobic004G162400 Sobic009G120200 Sobic009G120200 Sobic002G210800--Sobic009G120200 Sobic002G210800--Sobic009G161000 Sobic005G178100 Sobic005G178100 Sobic002G210800--Sobic005G178100 Sobic002G266000 Sobic002G266000 Sobic002G249200--Sobic002G266000 Sobic002G249200--Sobic001G282600 Sobic002G249200--Sobic009G161000 Sobic002G249200--Sobic002G274800 Sobic002G249200--Sobic001G504900 Sobic002G249200--Sobic005G178100 Sobic010G203200 Sobic010G203200 Sobic002G249200--Sobic010G203200 Sobic002G249200--Sobic007G225900 Sobic002G249200--Sobic004G124200 Sobic002G381300 Sobic002G381300 Sobic005G016800--Sobic002G381300 Sobic009G236200 Sobic009G236200 Sobic005G016800--Sobic009G236200 Sobic007G125900 Sobic007G125900 Sobic005G016800--Sobic007G125900 Sobic001G156300 Sobic001G156300 Sobic005G016800--Sobic001G156300 Sobic002G355200 Sobic002G355200 Sobic005G016800--Sobic002G355200 Sobic004G236550 Sobic004G236550 Sobic005G016800--Sobic004G236550 Sobic009G079300 Sobic009G079300 Sobic005G016800--Sobic009G079300 Sobic005G231900 Sobic005G231900 Sobic005G016800--Sobic005G231900 Sobic001G151800 Sobic001G151800 Sobic005G016800--Sobic001G151800
Octagon: transcription factors


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