Gene annotation
Transcriptome id Sobic.010G255500.1
Synonym EPC1, Sb10g029290
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
exostosin, putative, expressed
UniProt C5Z9A1
Pfam PF09258
Panther DB PTHR11062 PTHR11062:SF103
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0015012heparan sulfate proteoglycan biosynthetic process GO:0006024glycosaminoglycan biosynthetic process


Orthologs (automatic annotation)
TAIR AT3G55830 : Nucleotide-diphospho-sugar transferases superfamily protein
RAP-DB (Rice) LOC_Os06g49150.1 : exostosin, putative, expressed
MaizeGDB (Corn) Zm00025a018410
Brachypodium KQK17456
Barley HORVU7Hr1G096150.4 , HORVU7Hr1G096150.5 , HORVU7Hr1G096150.6 , HORVU7Hr1G096150.7 , HORVU7Hr1G096150.1 , HORVU7Hr1G096150.2 , HORVU7Hr1G096150.3 , HORVU7Hr1G096150.8 , HORVU7Hr1G096150.9 , HORVU7Hr1G096150.13 , HORVU7Hr1G096150.14 , HORVU7Hr1G096150.15
Wheat TraesCS7D02G407200 , TraesCS7A02G413900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G252300 universal stress protein domain containing protein, putative, expressed -
2 Sobic.006G115300 amino acid transporter, putative, expressed -
3 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.002G274800 "senescence-inducible chloroplast stay-green protein, GenBank annotation:AY850140"(PubMedID : 17513504)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@senescence-inducible chloroplast stay-green protein 1, putative, expressed -
5 Sobic.009G097300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.23 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
6 Sobic.010G124800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase 7, putative, expressed -
7 Sobic.004G113300 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
8 Sobic.003G281900 regulator of chromosome condensation, putative, expressed -
9 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
10 Sobic.008G190900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
11 Sobic.004G226100 RIPER1 - Ripening-related family protein precursor, expressed -
12 Sobic.001G271500 expressed protein -
13 Sobic.003G105800 No apical meristem protein, putative, expressed -
14 Sobic.006G086100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
15 Sobic.009G203700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA18 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
16 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
17 Sobic.004G206401 - -
18 Sobic.005G214400 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
19 Sobic.007G225900 OsWAK13 - OsWAK receptor-like protein kinase, expressed -
20 Sobic.003G276000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY26, expressed -


Gene co-expression network
sample Sobic010G255500 Sobic010G255500 Sobic003G252300 Sobic003G252300 Sobic010G255500--Sobic003G252300 Sobic006G115300 Sobic006G115300 Sobic010G255500--Sobic006G115300 Sobic008G079300 Sobic008G079300 Sobic010G255500--Sobic008G079300 Sobic002G274800 Sobic002G274800 Sobic010G255500--Sobic002G274800 Sobic009G097300 Sobic009G097300 Sobic010G255500--Sobic009G097300 Sobic010G124800 Sobic010G124800 Sobic010G255500--Sobic010G124800 Sobic004G113300 Sobic004G113300 Sobic010G255500--Sobic004G113300 Sobic003G281900 Sobic003G281900 Sobic010G255500--Sobic003G281900 Sobic003G184900 Sobic003G184900 Sobic010G255500--Sobic003G184900 Sobic003G252300--Sobic002G274800 Sobic005G216000 Sobic005G216000 Sobic003G252300--Sobic005G216000 Sobic003G105800 Sobic003G105800 Sobic003G252300--Sobic003G105800 Sobic003G252300--Sobic006G115300 Sobic008G190900 Sobic008G190900 Sobic003G252300--Sobic008G190900 Sobic004G162400 Sobic004G162400 Sobic003G252300--Sobic004G162400 Sobic008G189200 Sobic008G189200 Sobic003G252300--Sobic008G189200 Sobic007G225900 Sobic007G225900 Sobic003G252300--Sobic007G225900 Sobic001G092000 Sobic001G092000 Sobic003G252300--Sobic001G092000 Sobic009G118600 Sobic009G118600 Sobic006G115300--Sobic009G118600 Sobic007G131700 Sobic007G131700 Sobic006G115300--Sobic007G131700 Sobic003G252400 Sobic003G252400 Sobic006G115300--Sobic003G252400 Sobic001G235500 Sobic001G235500 Sobic006G115300--Sobic001G235500 Sobic006G115300--Sobic003G252300 Sobic004G236550 Sobic004G236550 Sobic006G115300--Sobic004G236550 Sobic003G272400 Sobic003G272400 Sobic006G115300--Sobic003G272400 Sobic001G521500 Sobic001G521500 Sobic006G115300--Sobic001G521500 Sobic003G126300 Sobic003G126300 Sobic006G115300--Sobic003G126300 Sobic008G079300--Sobic003G184900 Sobic008G079300--Sobic003G105800 Sobic008G079300--Sobic007G225900 Sobic004G321800 Sobic004G321800 Sobic008G079300--Sobic004G321800 Sobic009G207600 Sobic009G207600 Sobic008G079300--Sobic009G207600 Sobic005G178100 Sobic005G178100 Sobic008G079300--Sobic005G178100 Sobic009G034700 Sobic009G034700 Sobic008G079300--Sobic009G034700 Sobic001G474500 Sobic001G474500 Sobic008G079300--Sobic001G474500 Sobic001G325200 Sobic001G325200 Sobic008G079300--Sobic001G325200 Sobic010G043400 Sobic010G043400 Sobic002G274800--Sobic010G043400 Sobic002G274800--Sobic007G225900 Sobic002G274800--Sobic003G252300 Sobic002G274800--Sobic003G105800 Sobic002G249200 Sobic002G249200 Sobic002G274800--Sobic002G249200 Sobic002G274800--Sobic008G189200 Sobic009G161000 Sobic009G161000 Sobic002G274800--Sobic009G161000 Sobic004G124200 Sobic004G124200 Sobic002G274800--Sobic004G124200 Sobic001G282600 Sobic001G282600 Sobic002G274800--Sobic001G282600 Sobic003G137900 Sobic003G137900 Sobic009G097300--Sobic003G137900 Sobic005G215766 Sobic005G215766 Sobic009G097300--Sobic005G215766 Sobic003G397400 Sobic003G397400 Sobic009G097300--Sobic003G397400 Sobic006G272700 Sobic006G272700 Sobic009G097300--Sobic006G272700 Sobic009G097300--Sobic003G281900 Sobic003G064300 Sobic003G064300 Sobic009G097300--Sobic003G064300 Sobic009G076700 Sobic009G076700 Sobic009G097300--Sobic009G076700 Sobic007G073750 Sobic007G073750 Sobic009G097300--Sobic007G073750 Sobic007G143200 Sobic007G143200 Sobic009G097300--Sobic007G143200 Sobic010G245900 Sobic010G245900 Sobic010G124800--Sobic010G245900 Sobic010G124800--Sobic003G397400 Sobic010G124800--Sobic003G137900 Sobic009G064400 Sobic009G064400 Sobic010G124800--Sobic009G064400 Sobic010G124800--Sobic003G252400 Sobic010G238400 Sobic010G238400 Sobic010G124800--Sobic010G238400 Sobic010G124800--Sobic007G073750 Sobic007G143100 Sobic007G143100 Sobic010G124800--Sobic007G143100 Sobic005G016900 Sobic005G016900 Sobic010G124800--Sobic005G016900 Sobic002G324000 Sobic002G324000 Sobic004G113300--Sobic002G324000 Sobic002G190500 Sobic002G190500 Sobic004G113300--Sobic002G190500 Sobic004G050200 Sobic004G050200 Sobic004G113300--Sobic004G050200 Sobic004G113300--Sobic003G184900 Sobic004G113300--Sobic008G079300 Sobic005G130400 Sobic005G130400 Sobic004G113300--Sobic005G130400 Sobic001G274800 Sobic001G274800 Sobic004G113300--Sobic001G274800 Sobic004G113300--Sobic003G105800 Sobic004G060900 Sobic004G060900 Sobic004G113300--Sobic004G060900 Sobic003G281900--Sobic003G272400 Sobic003G281900--Sobic009G097300 Sobic002G306000 Sobic002G306000 Sobic003G281900--Sobic002G306000 Sobic003G281900--Sobic003G126300 Sobic004G353600 Sobic004G353600 Sobic003G281900--Sobic004G353600 Sobic003G397500 Sobic003G397500 Sobic003G281900--Sobic003G397500 Sobic009G213000 Sobic009G213000 Sobic003G281900--Sobic009G213000 Sobic009G079300 Sobic009G079300 Sobic003G281900--Sobic009G079300 Sobic007G047700 Sobic007G047700 Sobic003G281900--Sobic007G047700 Sobic003G184900--Sobic003G105800 Sobic003G184900--Sobic008G079300 Sobic003G184900--Sobic004G321800 Sobic006G100332 Sobic006G100332 Sobic003G184900--Sobic006G100332 Sobic003G184900--Sobic007G225900 Sobic003G184900--Sobic002G324000 Sobic003G087200 Sobic003G087200 Sobic003G184900--Sobic003G087200 Sobic003G184900--Sobic005G178100 Sobic001G182500 Sobic001G182500 Sobic003G184900--Sobic001G182500
Octagon: transcription factors


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