Gene annotation
Transcriptome id Sobic.004G239200.1
Synonym
Functional annotation transcription factor-related, putative, expressed
UniProt C5XYT9
Pfam PF04182
Panther DB PTHR15180
NCBI CDD -
KEGG Orthology K15199; general transcription factor 3C polypeptide 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G17450 : B-block binding subunit of TFIIIC
RAP-DB (Rice) LOC_Os02g42200.1 : transcription factor-related, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK00450 , KQK00445 , KQK00447 , KQK00446 , KQK00449 , KQK00448
Barley HORVU1Hr1G093000.9 , HORVU1Hr1G093000.8 , HORVU1Hr1G093000.3 , HORVU1Hr1G093000.2 , HORVU1Hr1G093000.1 , HORVU1Hr1G093000.7 , HORVU1Hr1G093000.6 , HORVU1Hr1G093000.5 , HORVU1Hr1G093000.4 , HORVU6Hr1G059300.18 , HORVU1Hr1G093000.22 , HORVU1Hr1G093000.23 , HORVU1Hr1G093000.20 , HORVU1Hr1G093000.21 , HORVU1Hr1G093000.26 , HORVU1Hr1G093000.27 , HORVU1Hr1G093000.24 , HORVU1Hr1G093000.25 , HORVU1Hr1G093000.28 , HORVU1Hr1G093000.29 , HORVU6Hr1G059300.16 , HORVU1Hr1G093000.19 , HORVU1Hr1G093000.18 , HORVU1Hr1G093000.13 , HORVU1Hr1G093000.12 , HORVU1Hr1G093000.11 , HORVU1Hr1G093000.10 , HORVU1Hr1G093000.17 , HORVU1Hr1G093000.16 , HORVU1Hr1G093000.15 , HORVU1Hr1G093000.14 , HORVU6Hr1G059300.9 , HORVU6Hr1G059300.8 , HORVU6Hr1G059300.3 , HORVU6Hr1G059300.2 , HORVU6Hr1G059300.5 , HORVU6Hr1G059300.4 , HORVU6Hr1G059300.7 , HORVU6Hr1G059300.6 , HORVU1Hr1G093000.52 , HORVU1Hr1G093000.51 , HORVU1Hr1G093000.50 , HORVU6Hr1G059300.20 , HORVU6Hr1G059300.21 , HORVU6Hr1G059300.22 , HORVU6Hr1G059300.24 , HORVU6Hr1G059300.25 , HORVU6Hr1G059300.26 , HORVU1Hr1G093000.44 , HORVU1Hr1G093000.46 , HORVU1Hr1G093000.47 , HORVU1Hr1G093000.40 , HORVU1Hr1G093000.41 , HORVU1Hr1G093000.43 , HORVU1Hr1G093000.48 , HORVU1Hr1G093000.49 , HORVU6Hr1G059300.15 , HORVU6Hr1G059300.14 , HORVU6Hr1G059300.17 , HORVU6Hr1G059300.11 , HORVU6Hr1G059300.10 , HORVU6Hr1G059300.13 , HORVU6Hr1G059300.12 , HORVU1Hr1G093000.39 , HORVU1Hr1G093000.38 , HORVU1Hr1G093000.35 , HORVU1Hr1G093000.34 , HORVU1Hr1G093000.37 , HORVU1Hr1G093000.36 , HORVU1Hr1G093000.31 , HORVU1Hr1G093000.30 , HORVU1Hr1G093000.33 , HORVU1Hr1G093000.32 , HORVU1Hr1G093000.45 , HORVU1Hr1G093000.42
Wheat TraesCS1B02G460500 , TraesCS1B02G460500 , TraesCS1D02G435700 , TraesCS6A02G221300 , TraesCS1A02G426200 , TraesCS6A02G233300 , TraesCS6D02G213900 , TraesCS6D02G213900 , TraesCS6D02G213900 , TraesCS6A02G221300 , TraesCS6B02G259900 , TraesCS6B02G259900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G328250 - -
2 Sobic.006G099100 - -
3 Sobic.010G124300 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
4 Sobic.007G170000 - -
5 Sobic.004G240600 tRNA synthetase, putative, expressed K01866: YARS, tyrosyl-tRNA synthetase
6 Sobic.009G161300 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Ribosomal protein("PubMedID : 26759170,PubMedID : 24597475")@40S ribosomal protein S15a, putative, expressed -
7 Sobic.006G190700 - -
8 Sobic.010G079600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.002G130601 - -
10 Sobic.007G079500 hypothetical protein -
11 Sobic.003G034200 - -
12 Sobic.002G044800 SAM dependent carboxyl methyltransferase, putative, expressed -
13 Sobic.003G364100 glycosyl hydrolase, putative, expressed K01183: chitinase
14 Sobic.010G188700 expressed protein -
15 Sobic.003G076100 limonoid UDP-glucosyltransferase, putative, expressed -
16 Sobic.004G333150 - -
17 Sobic.003G277850 - -
18 Sobic.002G389301 - -
19 Sobic.009G196400 expressed protein -
20 Sobic.001G479000 - -


Gene co-expression network
sample Sobic004G239200 Sobic004G239200 Sobic002G328250 Sobic002G328250 Sobic004G239200--Sobic002G328250 Sobic006G099100 Sobic006G099100 Sobic004G239200--Sobic006G099100 Sobic010G124300 Sobic010G124300 Sobic004G239200--Sobic010G124300 Sobic007G170000 Sobic007G170000 Sobic004G239200--Sobic007G170000 Sobic004G240600 Sobic004G240600 Sobic004G239200--Sobic004G240600 Sobic009G161300 Sobic009G161300 Sobic004G239200--Sobic009G161300 Sobic006G190700 Sobic006G190700 Sobic004G239200--Sobic006G190700 Sobic010G079600 Sobic010G079600 Sobic004G239200--Sobic010G079600 Sobic002G130601 Sobic002G130601 Sobic004G239200--Sobic002G130601 Sobic002G328250--Sobic004G239200 Sobic001G173251 Sobic001G173251 Sobic002G328250--Sobic001G173251 Sobic002G328250--Sobic006G099100 Sobic007G079500 Sobic007G079500 Sobic002G328250--Sobic007G079500 Sobic002G363466 Sobic002G363466 Sobic002G328250--Sobic002G363466 Sobic010G188700 Sobic010G188700 Sobic002G328250--Sobic010G188700 Sobic003G277850 Sobic003G277850 Sobic002G328250--Sobic003G277850 Sobic002G328250--Sobic007G170000 Sobic010G030600 Sobic010G030600 Sobic002G328250--Sobic010G030600 Sobic006G253300 Sobic006G253300 Sobic006G099100--Sobic006G253300 Sobic006G099100--Sobic004G239200 Sobic006G099100--Sobic009G161300 Sobic006G099100--Sobic002G363466 Sobic006G099100--Sobic002G130601 Sobic006G099100--Sobic007G079500 Sobic006G099100--Sobic002G328250 Sobic006G099100--Sobic010G188700 Sobic006G099100--Sobic003G277850 Sobic001G276550 Sobic001G276550 Sobic010G124300--Sobic001G276550 Sobic010G124300--Sobic003G277850 Sobic010G124300--Sobic004G239200 Sobic003G034200 Sobic003G034200 Sobic010G124300--Sobic003G034200 Sobic005G156600 Sobic005G156600 Sobic010G124300--Sobic005G156600 Sobic010G006000 Sobic010G006000 Sobic010G124300--Sobic010G006000 Sobic004G314200 Sobic004G314200 Sobic010G124300--Sobic004G314200 Sobic003G123800 Sobic003G123800 Sobic010G124300--Sobic003G123800 Sobic009G057000 Sobic009G057000 Sobic010G124300--Sobic009G057000 Sobic006G113500 Sobic006G113500 Sobic007G170000--Sobic006G113500 Sobic007G170000--Sobic010G079600 Sobic001G256200 Sobic001G256200 Sobic007G170000--Sobic001G256200 Sobic004G148100 Sobic004G148100 Sobic007G170000--Sobic004G148100 Sobic002G040900 Sobic002G040900 Sobic007G170000--Sobic002G040900 Sobic002G044800 Sobic002G044800 Sobic007G170000--Sobic002G044800 Sobic009G196400 Sobic009G196400 Sobic007G170000--Sobic009G196400 Sobic001G462700 Sobic001G462700 Sobic007G170000--Sobic001G462700 Sobic007G204700 Sobic007G204700 Sobic007G170000--Sobic007G204700 Sobic004G240600--Sobic006G190700 Sobic004G333150 Sobic004G333150 Sobic004G240600--Sobic004G333150 Sobic002G139300 Sobic002G139300 Sobic004G240600--Sobic002G139300 Sobic004G240600--Sobic009G196400 Sobic010G052700 Sobic010G052700 Sobic004G240600--Sobic010G052700 Sobic001G333400 Sobic001G333400 Sobic004G240600--Sobic001G333400 Sobic005G011200 Sobic005G011200 Sobic004G240600--Sobic005G011200 Sobic009G106800 Sobic009G106800 Sobic004G240600--Sobic009G106800 Sobic008G158100 Sobic008G158100 Sobic004G240600--Sobic008G158100 Sobic006G268500 Sobic006G268500 Sobic009G161300--Sobic006G268500 Sobic009G071000 Sobic009G071000 Sobic009G161300--Sobic009G071000 Sobic009G161300--Sobic006G099100 Sobic009G161300--Sobic004G239200 Sobic002G010900 Sobic002G010900 Sobic009G161300--Sobic002G010900 Sobic009G161300--Sobic006G253300 Sobic002G422300 Sobic002G422300 Sobic009G161300--Sobic002G422300 Sobic006G227750 Sobic006G227750 Sobic009G161300--Sobic006G227750 Sobic009G157450 Sobic009G157450 Sobic009G161300--Sobic009G157450 Sobic006G190700--Sobic004G240600 Sobic006G190700--Sobic002G139300 Sobic006G190700--Sobic010G052700 Sobic006G214600 Sobic006G214600 Sobic006G190700--Sobic006G214600 Sobic006G190700--Sobic004G333150 Sobic006G190700--Sobic001G333400 Sobic006G190700--Sobic005G011200 Sobic003G280200 Sobic003G280200 Sobic006G190700--Sobic003G280200 Sobic006G190700--Sobic008G158100 Sobic010G079600--Sobic007G170000 Sobic003G364100 Sobic003G364100 Sobic010G079600--Sobic003G364100 Sobic010G079600--Sobic002G044800 Sobic010G079600--Sobic001G256200 Sobic010G079600--Sobic009G196400 Sobic010G079600--Sobic004G333150 Sobic002G421800 Sobic002G421800 Sobic010G079600--Sobic002G421800 Sobic004G273400 Sobic004G273400 Sobic010G079600--Sobic004G273400 Sobic010G079600--Sobic006G113500 Sobic004G292001 Sobic004G292001 Sobic002G130601--Sobic004G292001 Sobic007G065800 Sobic007G065800 Sobic002G130601--Sobic007G065800 Sobic007G065900 Sobic007G065900 Sobic002G130601--Sobic007G065900 Sobic004G023500 Sobic004G023500 Sobic002G130601--Sobic004G023500 Sobic008G157800 Sobic008G157800 Sobic002G130601--Sobic008G157800 Sobic010G113600 Sobic010G113600 Sobic002G130601--Sobic010G113600 Sobic004G061701 Sobic004G061701 Sobic002G130601--Sobic004G061701 Sobic005G217300 Sobic005G217300 Sobic002G130601--Sobic005G217300 Sobic003G364950 Sobic003G364950 Sobic002G130601--Sobic003G364950
Octagon: transcription factors


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