Gene annotation
Transcriptome id Sobic.004G252800.1
Synonym Sb04g029220
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1Z5RPV8
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF68
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G08139 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g49550.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032614
Brachypodium PNT69481
Barley HORVU6Hr1G072430.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G252800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G434300 expressed protein -
2 Sobic.009G130300 AWPM-19-like membrane family protein, putative, expressed -
3 Sobic.006G203700 EF hand family protein, putative, expressed -
4 Sobic.001G310300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
6 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
7 Sobic.003G219800 transferase family protein, putative, expressed -
8 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
9 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
10 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
11 Sobic.007G186100 protein kinase, putative, expressed K13436: pto-interacting protein 1
12 Sobic.001G455700 ATMAP70 protein, putative, expressed -
13 Sobic.004G050700 plastocyanin-like domain containing protein, putative, expressed -
14 Sobic.010G065900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@formin-like protein 13, putative, expressed -
15 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
16 Sobic.001G295800 expressed protein -
17 Sobic.008G055100 dirigent, putative, expressed -
18 Sobic.003G316000 expressed protein -
19 Sobic.001G514200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family


Gene co-expression network
sample Sobic004G252800 Sobic004G252800 Sobic001G434300 Sobic001G434300 Sobic004G252800--Sobic001G434300 Sobic009G130300 Sobic009G130300 Sobic004G252800--Sobic009G130300 Sobic006G203700 Sobic006G203700 Sobic004G252800--Sobic006G203700 Sobic001G310300 Sobic001G310300 Sobic004G252800--Sobic001G310300 Sobic009G181800 Sobic009G181800 Sobic004G252800--Sobic009G181800 Sobic007G218800 Sobic007G218800 Sobic004G252800--Sobic007G218800 Sobic003G219800 Sobic003G219800 Sobic004G252800--Sobic003G219800 Sobic010G028200 Sobic010G028200 Sobic004G252800--Sobic010G028200 Sobic003G160700 Sobic003G160700 Sobic004G252800--Sobic003G160700 Sobic002G154600 Sobic002G154600 Sobic001G434300--Sobic002G154600 Sobic001G434300--Sobic007G218800 Sobic001G434300--Sobic003G219800 Sobic001G038300 Sobic001G038300 Sobic001G434300--Sobic001G038300 Sobic003G316000 Sobic003G316000 Sobic001G434300--Sobic003G316000 Sobic001G434300--Sobic001G310300 Sobic005G061200 Sobic005G061200 Sobic001G434300--Sobic005G061200 Sobic001G434300--Sobic009G181800 Sobic001G418100 Sobic001G418100 Sobic001G434300--Sobic001G418100 Sobic003G000200 Sobic003G000200 Sobic009G130300--Sobic003G000200 Sobic009G221800 Sobic009G221800 Sobic009G130300--Sobic009G221800 Sobic003G078900 Sobic003G078900 Sobic009G130300--Sobic003G078900 Sobic009G130300--Sobic001G310300 Sobic003G115200 Sobic003G115200 Sobic009G130300--Sobic003G115200 Sobic001G514200 Sobic001G514200 Sobic009G130300--Sobic001G514200 Sobic003G321400 Sobic003G321400 Sobic009G130300--Sobic003G321400 Sobic001G261460 Sobic001G261460 Sobic009G130300--Sobic001G261460 Sobic010G047600 Sobic010G047600 Sobic009G130300--Sobic010G047600 Sobic006G203700--Sobic001G310300 Sobic002G003800 Sobic002G003800 Sobic006G203700--Sobic002G003800 Sobic004G042000 Sobic004G042000 Sobic006G203700--Sobic004G042000 Sobic010G085800 Sobic010G085800 Sobic006G203700--Sobic010G085800 Sobic006G197100 Sobic006G197100 Sobic006G203700--Sobic006G197100 Sobic010G008400 Sobic010G008400 Sobic006G203700--Sobic010G008400 Sobic006G203700--Sobic001G514200 Sobic007G090469 Sobic007G090469 Sobic006G203700--Sobic007G090469 Sobic001G500000 Sobic001G500000 Sobic006G203700--Sobic001G500000 Sobic001G310300--Sobic006G203700 Sobic001G310300--Sobic010G085800 Sobic001G310300--Sobic001G514200 Sobic008G055100 Sobic008G055100 Sobic001G310300--Sobic008G055100 Sobic001G481000 Sobic001G481000 Sobic001G310300--Sobic001G481000 Sobic009G109000 Sobic009G109000 Sobic001G310300--Sobic009G109000 Sobic001G310300--Sobic010G008400 Sobic008G005100 Sobic008G005100 Sobic001G310300--Sobic008G005100 Sobic001G310300--Sobic003G160700 Sobic009G181800--Sobic001G418100 Sobic009G181800--Sobic003G219800 Sobic010G252401 Sobic010G252401 Sobic009G181800--Sobic010G252401 Sobic008G186100 Sobic008G186100 Sobic009G181800--Sobic008G186100 Sobic005G113300 Sobic005G113300 Sobic009G181800--Sobic005G113300 Sobic003G027400 Sobic003G027400 Sobic009G181800--Sobic003G027400 Sobic002G393400 Sobic002G393400 Sobic009G181800--Sobic002G393400 Sobic002G250000 Sobic002G250000 Sobic009G181800--Sobic002G250000 Sobic004G310200 Sobic004G310200 Sobic009G181800--Sobic004G310200 Sobic007G218800--Sobic008G055100 Sobic007G218800--Sobic002G154600 Sobic007G176000 Sobic007G176000 Sobic007G218800--Sobic007G176000 Sobic010G252500 Sobic010G252500 Sobic007G218800--Sobic010G252500 Sobic009G088900 Sobic009G088900 Sobic007G218800--Sobic009G088900 Sobic003G311800 Sobic003G311800 Sobic007G218800--Sobic003G311800 Sobic001G430100 Sobic001G430100 Sobic007G218800--Sobic001G430100 Sobic001G049900 Sobic001G049900 Sobic007G218800--Sobic001G049900 Sobic007G218800--Sobic010G085800 Sobic003G219800--Sobic001G418100 Sobic003G219800--Sobic009G181800 Sobic001G444800 Sobic001G444800 Sobic003G219800--Sobic001G444800 Sobic006G156000 Sobic006G156000 Sobic003G219800--Sobic006G156000 Sobic003G443300 Sobic003G443300 Sobic003G219800--Sobic003G443300 Sobic001G040100 Sobic001G040100 Sobic003G219800--Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic003G219800--Sobic005G112800 Sobic003G219800--Sobic005G113300 Sobic009G238900 Sobic009G238900 Sobic003G219800--Sobic009G238900 Sobic003G209000 Sobic003G209000 Sobic010G028200--Sobic003G209000 Sobic010G065900 Sobic010G065900 Sobic010G028200--Sobic010G065900 Sobic002G418400 Sobic002G418400 Sobic010G028200--Sobic002G418400 Sobic001G404800 Sobic001G404800 Sobic010G028200--Sobic001G404800 Sobic003G436700 Sobic003G436700 Sobic010G028200--Sobic003G436700 Sobic004G055700 Sobic004G055700 Sobic010G028200--Sobic004G055700 Sobic010G028200--Sobic003G160700 Sobic004G008400 Sobic004G008400 Sobic010G028200--Sobic004G008400 Sobic002G136700 Sobic002G136700 Sobic010G028200--Sobic002G136700 Sobic003G160700--Sobic005G113300 Sobic004G041900 Sobic004G041900 Sobic003G160700--Sobic004G041900 Sobic003G125650 Sobic003G125650 Sobic003G160700--Sobic003G125650 Sobic003G078200 Sobic003G078200 Sobic003G160700--Sobic003G078200 Sobic001G475500 Sobic001G475500 Sobic003G160700--Sobic001G475500 Sobic001G502900 Sobic001G502900 Sobic003G160700--Sobic001G502900 Sobic004G220000 Sobic004G220000 Sobic003G160700--Sobic004G220000 Sobic009G188000 Sobic009G188000 Sobic003G160700--Sobic009G188000 Sobic003G160700--Sobic003G436700
Octagon: transcription factors


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