Gene annotation
Transcriptome id Sobic.004G260600.1
Synonym FAD2, Sb04g029900
Functional annotation Fatty acid desaturase 2 (omega-6 fatty acid desaturase) FAD2 (Os) (PubMedID : 27208977)
fatty acid desaturase, putative, expressed
UniProt A3F5L3
Pfam PF11960 PF00487
Panther DB PTHR32100 PTHR32100:SF13
NCBI CDD -
KEGG Orthology K10256; omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase)
Gene Ontology GO:0016717; oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water GO:0006629lipid metabolic process


Orthologs (automatic annotation)
TAIR AT3G12120 : fatty acid desaturase 2
RAP-DB (Rice) LOC_Os02g48560.1 : fatty acid desaturase, putative, expressed
MaizeGDB (Corn) Zm00025a021811 , Zm00025a032528 , Zm00025a021812 , Zm00025a054239 , Zm00025a054240
Brachypodium KQK01023 , KQK01022 , KQK05878 , KQK01024 , KQK01025 , KQK01026
Barley HORVU6Hr1G070540.1 , HORVU6Hr1G070550.1 , HORVU6Hr1G070550.2 , HORVU6Hr1G070420.1 , HORVU6Hr1G070420.2
Wheat TraesCS6A02G280100 , TraesCS6B02G309300 , TraesCS6B02G309400 , TraesCS6B02G309500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G044600 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.006G096000 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
3 Sobic.008G036800 alkylresorcinol synthase gene preferentially expressed in root hair (PubMedID : 20348430)@Chalcone and stilbene synthase family("PubMedID : 26759170,PubMedID : 24597475")@chalcone synthase, putative, expressed -
4 Sobic.002G012300 DUF538 domain containing protein, putative, expressed -
5 Sobic.008G158600 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.008G158501 - -
7 Sobic.003G426600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.004G292600 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.004G165100 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@RCN2 Centroradialis-like1 homologous to TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
10 Sobic.002G012500 DUF538 domain containing protein, putative, expressed -
11 Sobic.001G162233 - -
12 Sobic.008G022000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
13 Sobic.006G132800 expressed protein -
14 Sobic.001G296700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
15 Sobic.009G171500 expressed protein -
16 Sobic.002G294000 purine permease, putative, expressed -
17 Sobic.007G054900 plant protein of unknown function domain containing protein, expressed -
18 Sobic.008G026000 expressed protein -
19 Sobic.001G259400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
20 Sobic.006G008000 O-methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic004G260600 Sobic004G260600 Sobic002G044600 Sobic002G044600 Sobic004G260600--Sobic002G044600 Sobic006G096000 Sobic006G096000 Sobic004G260600--Sobic006G096000 Sobic008G036800 Sobic008G036800 Sobic004G260600--Sobic008G036800 Sobic002G012300 Sobic002G012300 Sobic004G260600--Sobic002G012300 Sobic008G158600 Sobic008G158600 Sobic004G260600--Sobic008G158600 Sobic008G158501 Sobic008G158501 Sobic004G260600--Sobic008G158501 Sobic003G426600 Sobic003G426600 Sobic004G260600--Sobic003G426600 Sobic004G292600 Sobic004G292600 Sobic004G260600--Sobic004G292600 Sobic004G165100 Sobic004G165100 Sobic004G260600--Sobic004G165100 Sobic002G044600--Sobic008G036800 Sobic006G026500 Sobic006G026500 Sobic002G044600--Sobic006G026500 Sobic001G062132 Sobic001G062132 Sobic002G044600--Sobic001G062132 Sobic002G044600--Sobic002G012300 Sobic006G234900 Sobic006G234900 Sobic002G044600--Sobic006G234900 Sobic006G101300 Sobic006G101300 Sobic002G044600--Sobic006G101300 Sobic002G044600--Sobic008G158501 Sobic002G044600--Sobic008G158600 Sobic008G022000 Sobic008G022000 Sobic002G044600--Sobic008G022000 Sobic006G096000--Sobic003G426600 Sobic006G234466 Sobic006G234466 Sobic006G096000--Sobic006G234466 Sobic009G171500 Sobic009G171500 Sobic006G096000--Sobic009G171500 Sobic006G096000--Sobic008G022000 Sobic006G096000--Sobic002G012300 Sobic010G045500 Sobic010G045500 Sobic006G096000--Sobic010G045500 Sobic002G012500 Sobic002G012500 Sobic006G096000--Sobic002G012500 Sobic010G196000 Sobic010G196000 Sobic006G096000--Sobic010G196000 Sobic008G127933 Sobic008G127933 Sobic006G096000--Sobic008G127933 Sobic008G036800--Sobic002G012300 Sobic008G036800--Sobic002G012500 Sobic008G036800--Sobic008G022000 Sobic008G036800--Sobic008G158600 Sobic008G036800--Sobic008G158501 Sobic008G036800--Sobic003G426600 Sobic008G066200 Sobic008G066200 Sobic008G036800--Sobic008G066200 Sobic006G008000 Sobic006G008000 Sobic008G036800--Sobic006G008000 Sobic008G036800--Sobic002G044600 Sobic002G012300--Sobic008G158600 Sobic002G012300--Sobic008G158501 Sobic002G012300--Sobic008G022000 Sobic003G079200 Sobic003G079200 Sobic002G012300--Sobic003G079200 Sobic002G012300--Sobic006G008000 Sobic002G012300--Sobic002G012500 Sobic002G012300--Sobic008G066200 Sobic002G012300--Sobic008G036800 Sobic002G063800 Sobic002G063800 Sobic002G012300--Sobic002G063800 Sobic008G158600--Sobic002G012300 Sobic008G158600--Sobic003G079200 Sobic008G158600--Sobic008G158501 Sobic008G158600--Sobic002G012500 Sobic008G158600--Sobic002G063800 Sobic008G158600--Sobic008G022000 Sobic008G158600--Sobic008G036800 Sobic008G158600--Sobic006G008000 Sobic001G259400 Sobic001G259400 Sobic008G158600--Sobic001G259400 Sobic008G158501--Sobic002G012300 Sobic008G158501--Sobic008G158600 Sobic008G158501--Sobic008G022000 Sobic008G158501--Sobic003G079200 Sobic008G158501--Sobic002G012500 Sobic008G158501--Sobic006G008000 Sobic008G158501--Sobic002G063800 Sobic008G158501--Sobic008G066200 Sobic008G158501--Sobic008G036800 Sobic003G426600--Sobic006G008000 Sobic003G426600--Sobic002G012500 Sobic003G426600--Sobic008G022000 Sobic003G426600--Sobic002G012300 Sobic010G082600 Sobic010G082600 Sobic003G426600--Sobic010G082600 Sobic003G426600--Sobic009G171500 Sobic003G426600--Sobic010G196000 Sobic003G426600--Sobic008G066200 Sobic004G141100 Sobic004G141100 Sobic003G426600--Sobic004G141100 Sobic001G539300 Sobic001G539300 Sobic004G292600--Sobic001G539300 Sobic001G162233 Sobic001G162233 Sobic004G292600--Sobic001G162233 Sobic010G156400 Sobic010G156400 Sobic004G292600--Sobic010G156400 Sobic005G011900 Sobic005G011900 Sobic004G292600--Sobic005G011900 Sobic004G165100--Sobic002G012300 Sobic008G026000 Sobic008G026000 Sobic004G165100--Sobic008G026000 Sobic004G165100--Sobic004G292600 Sobic004G165100--Sobic008G036800 Sobic004G165100--Sobic008G158600 Sobic004G165100--Sobic008G022000 Sobic001G487600 Sobic001G487600 Sobic004G165100--Sobic001G487600 Sobic004G165100--Sobic008G158501 Sobic007G054900 Sobic007G054900 Sobic004G165100--Sobic007G054900
Octagon: transcription factors


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