Gene annotation
Transcriptome id Sobic.004G165100.1
Synonym ATC, SbCN2 , Sb04g021650, TFL1, terminal flower1
Functional annotation Up-regulation in phyB-1 mutant (PubMedID : 26893475)
RCN2 Centroradialis-like1 homologous to TFL1 gene
contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed
UniProt C5XTE5
Pfam PF01161
Panther DB PTHR11362 PTHR11362:SF39
NCBI CDD KOG3346; Phosphatidylethanolamine binding protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27550 : centroradialis
RAP-DB (Rice) LOC_Os02g32950.1 : RCN2 Centroradialis-like1 homologous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed
MaizeGDB (Corn) Zm00025a031475
Brachypodium KQJ99720 , KQJ92229
Barley HORVU5Hr1G042230.15 , HORVU5Hr1G042230.10 , HORVU5Hr1G042230.9 , HORVU5Hr1G042230.7
Wheat TraesCS5D02G136300 , TraesCS5D02G136300 , TraesCS5A02G128600 , TraesCS5B02G127600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G012300 DUF538 domain containing protein, putative, expressed -
2 Sobic.008G026000 expressed protein -
3 Sobic.004G292600 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.008G036800 alkylresorcinol synthase gene preferentially expressed in root hair (PubMedID : 20348430)@Chalcone and stilbene synthase family("PubMedID : 26759170,PubMedID : 24597475")@chalcone synthase, putative, expressed -
5 Sobic.008G158600 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.008G022000 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed K05928: tocopherol O-methyltransferase
7 Sobic.001G487600 Lectin protein kinase family protein("PubMedID : 26759170,PubMedID : 24597475")@protein kinase domain containing protein, expressed -
8 Sobic.008G158501 - -
9 Sobic.007G054900 plant protein of unknown function domain containing protein, expressed -
10 Sobic.001G162233 - -
11 Sobic.002G044600 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.003G426600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.005G163800 laccase precursor protein, putative, expressed K05909: laccase
14 Sobic.006G198000 expressed protein -
15 Sobic.006G050800 expressed protein -
16 Sobic.003G441500 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
17 Sobic.001G114900 - -
18 Sobic.003G026400 aquaporin protein, putative, expressed K09874: aquaporin NIP
19 Sobic.002G012500 DUF538 domain containing protein, putative, expressed -
20 Sobic.002G369400 Sulfotransferase family protein (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -


Gene co-expression network
sample Sobic004G165100 Sobic004G165100 Sobic002G012300 Sobic002G012300 Sobic004G165100--Sobic002G012300 Sobic008G026000 Sobic008G026000 Sobic004G165100--Sobic008G026000 Sobic004G292600 Sobic004G292600 Sobic004G165100--Sobic004G292600 Sobic008G036800 Sobic008G036800 Sobic004G165100--Sobic008G036800 Sobic008G158600 Sobic008G158600 Sobic004G165100--Sobic008G158600 Sobic008G022000 Sobic008G022000 Sobic004G165100--Sobic008G022000 Sobic001G487600 Sobic001G487600 Sobic004G165100--Sobic001G487600 Sobic008G158501 Sobic008G158501 Sobic004G165100--Sobic008G158501 Sobic007G054900 Sobic007G054900 Sobic004G165100--Sobic007G054900 Sobic002G012300--Sobic008G158600 Sobic002G012300--Sobic008G158501 Sobic002G012300--Sobic008G022000 Sobic003G079200 Sobic003G079200 Sobic002G012300--Sobic003G079200 Sobic006G008000 Sobic006G008000 Sobic002G012300--Sobic006G008000 Sobic002G012500 Sobic002G012500 Sobic002G012300--Sobic002G012500 Sobic008G066200 Sobic008G066200 Sobic002G012300--Sobic008G066200 Sobic002G012300--Sobic008G036800 Sobic002G063800 Sobic002G063800 Sobic002G012300--Sobic002G063800 Sobic006G198000 Sobic006G198000 Sobic008G026000--Sobic006G198000 Sobic008G026000--Sobic004G292600 Sobic009G197100 Sobic009G197100 Sobic008G026000--Sobic009G197100 Sobic008G026000--Sobic004G165100 Sobic008G184700 Sobic008G184700 Sobic008G026000--Sobic008G184700 Sobic001G539300 Sobic001G539300 Sobic008G026000--Sobic001G539300 Sobic004G292600--Sobic001G539300 Sobic001G162233 Sobic001G162233 Sobic004G292600--Sobic001G162233 Sobic010G156400 Sobic010G156400 Sobic004G292600--Sobic010G156400 Sobic005G011900 Sobic005G011900 Sobic004G292600--Sobic005G011900 Sobic008G036800--Sobic002G012300 Sobic008G036800--Sobic002G012500 Sobic008G036800--Sobic008G022000 Sobic008G036800--Sobic008G158600 Sobic008G036800--Sobic008G158501 Sobic003G426600 Sobic003G426600 Sobic008G036800--Sobic003G426600 Sobic008G036800--Sobic008G066200 Sobic008G036800--Sobic006G008000 Sobic002G044600 Sobic002G044600 Sobic008G036800--Sobic002G044600 Sobic008G158600--Sobic002G012300 Sobic008G158600--Sobic003G079200 Sobic008G158600--Sobic008G158501 Sobic008G158600--Sobic002G012500 Sobic008G158600--Sobic002G063800 Sobic008G158600--Sobic008G022000 Sobic008G158600--Sobic008G036800 Sobic008G158600--Sobic006G008000 Sobic001G259400 Sobic001G259400 Sobic008G158600--Sobic001G259400 Sobic008G022000--Sobic002G012300 Sobic008G022000--Sobic006G008000 Sobic008G022000--Sobic008G066200 Sobic008G022000--Sobic002G012500 Sobic008G022000--Sobic008G158501 Sobic008G022000--Sobic003G079200 Sobic008G022000--Sobic008G158600 Sobic008G022000--Sobic008G036800 Sobic008G022000--Sobic003G426600 Sobic001G487600--Sobic003G426600 Sobic001G280800 Sobic001G280800 Sobic001G487600--Sobic001G280800 Sobic001G487600--Sobic002G012500 Sobic001G487600--Sobic008G036800 Sobic003G376100 Sobic003G376100 Sobic001G487600--Sobic003G376100 Sobic004G022900 Sobic004G022900 Sobic001G487600--Sobic004G022900 Sobic001G487600--Sobic008G022000 Sobic001G487600--Sobic008G158600 Sobic009G145600 Sobic009G145600 Sobic001G487600--Sobic009G145600 Sobic008G158501--Sobic002G012300 Sobic008G158501--Sobic008G158600 Sobic008G158501--Sobic008G022000 Sobic008G158501--Sobic003G079200 Sobic008G158501--Sobic002G012500 Sobic008G158501--Sobic006G008000 Sobic008G158501--Sobic002G063800 Sobic008G158501--Sobic008G066200 Sobic008G158501--Sobic008G036800 Sobic010G009900 Sobic010G009900 Sobic007G054900--Sobic010G009900 Sobic001G242000 Sobic001G242000 Sobic007G054900--Sobic001G242000 Sobic007G054900--Sobic008G158600 Sobic007G054900--Sobic004G292600 Sobic007G054900--Sobic002G012300 Sobic007G054900--Sobic005G011900 Sobic002G369400 Sobic002G369400 Sobic007G054900--Sobic002G369400 Sobic007G054900--Sobic001G162233 Sobic007G054900--Sobic008G158501
Octagon: transcription factors


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