Gene annotation
Transcriptome id Sobic.003G441500.1
Synonym Sb03g047120
Functional annotation RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed
UniProt C5XJB5
Pfam PF06830
Panther DB PTHR31656 PTHR31656:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19430 : late embryogenesis abundant protein-related / LEA protein-related
RAP-DB (Rice) LOC_Os01g73700.1 : RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a011534 , Zm00025a052221 , Zm00025a033481 , Zm00025a040983 , Zm00025a002979 , Zm00025a025854 , Zm00025a029575 , Zm00025a039058 , Zm00025a025852 , Zm00025a025851
Brachypodium KQK11722 , KQK11723 , KQJ82493 , KQJ92264 , KQJ92269 , KQK09956
Barley HORVU3Hr1G075070.1 , HORVU3Hr1G113430.2 , HORVU3Hr1G113430.1 , HORVU3Hr1G113530.6 , HORVU3Hr1G113530.4 , HORVU3Hr1G113530.5 , HORVU3Hr1G113530.2 , HORVU3Hr1G113530.3 , HORVU3Hr1G113530.1 , HORVU3Hr1G113440.1
Wheat TraesCS4B02G327400 , TraesCSU02G059100 , TraesCS2D02G291700 , TraesCS3A02G296600 , TraesCS1D02G022800 , TraesCS2D02G291400 , TraesCS4D02G324300 , TraesCS2B02G310400 , TraesCS2A02G293800 , TraesCS2B02G310100 , TraesCS3D02G526000 , TraesCS1A02G023300 , TraesCS3D02G306100 , TraesCS3A02G519700 , TraesCS2A02G294100 , TraesCS3D02G526100 , TraesCS4D02G324500 , TraesCS3B02G586200 , TraesCS4D02G324400 , TraesCS3B02G340500 , TraesCS3B02G587300 , TraesCSU02G059000 , TraesCS3A02G518800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G430500 OsCML23 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
2 Sobic.001G487600 Lectin protein kinase family protein("PubMedID : 26759170,PubMedID : 24597475")@protein kinase domain containing protein, expressed -
3 Sobic.008G128200 - -
4 Sobic.005G069800 OsWAK124 - OsWAK receptor-like protein OsWAK-RLP, expressed -
5 Sobic.010G045500 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
6 Sobic.004G165100 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@RCN2 Centroradialis-like1 homologous to TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
7 Sobic.005G215400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
8 Sobic.008G026000 expressed protein -
9 Sobic.006G234466 - -
10 Sobic.002G105300 SCP-like extracellular protein, expressed -
11 Sobic.008G002800 fatty acid desaturase, putative, expressed K10257: FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
12 Sobic.005G070200 OsWAK91 - OsWAK receptor-like protein kinase, expressed -
13 Sobic.006G078900 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@tetraspanin family protein, putative, expressed -
14 Sobic.004G180700 expressed protein -
15 Sobic.003G426600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.003G364200 glycosyl hydrolase, putative, expressed K01183: chitinase
17 Sobic.001G342400 SPX domain-3("PubMedID : 26759170,PubMedID : 24597475")@SPX domain-containing protein, putative, expressed -
18 Sobic.003G143000 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
19 Sobic.008G036800 alkylresorcinol synthase gene preferentially expressed in root hair (PubMedID : 20348430)@Chalcone and stilbene synthase family("PubMedID : 26759170,PubMedID : 24597475")@chalcone synthase, putative, expressed -
20 Sobic.006G102650 - -


Gene co-expression network
sample Sobic003G441500 Sobic003G441500 Sobic003G430500 Sobic003G430500 Sobic003G441500--Sobic003G430500 Sobic001G487600 Sobic001G487600 Sobic003G441500--Sobic001G487600 Sobic008G128200 Sobic008G128200 Sobic003G441500--Sobic008G128200 Sobic005G069800 Sobic005G069800 Sobic003G441500--Sobic005G069800 Sobic010G045500 Sobic010G045500 Sobic003G441500--Sobic010G045500 Sobic004G165100 Sobic004G165100 Sobic003G441500--Sobic004G165100 Sobic005G215400 Sobic005G215400 Sobic003G441500--Sobic005G215400 Sobic008G026000 Sobic008G026000 Sobic003G441500--Sobic008G026000 Sobic006G234466 Sobic006G234466 Sobic003G441500--Sobic006G234466 Sobic003G430500--Sobic003G441500 Sobic003G430500--Sobic010G045500 Sobic003G430500--Sobic008G128200 Sobic003G430500--Sobic008G026000 Sobic003G430500--Sobic006G234466 Sobic003G430500--Sobic001G487600 Sobic008G002800 Sobic008G002800 Sobic003G430500--Sobic008G002800 Sobic003G364200 Sobic003G364200 Sobic003G430500--Sobic003G364200 Sobic003G143000 Sobic003G143000 Sobic003G430500--Sobic003G143000 Sobic003G426600 Sobic003G426600 Sobic001G487600--Sobic003G426600 Sobic001G280800 Sobic001G280800 Sobic001G487600--Sobic001G280800 Sobic002G012500 Sobic002G012500 Sobic001G487600--Sobic002G012500 Sobic008G036800 Sobic008G036800 Sobic001G487600--Sobic008G036800 Sobic003G376100 Sobic003G376100 Sobic001G487600--Sobic003G376100 Sobic004G022900 Sobic004G022900 Sobic001G487600--Sobic004G022900 Sobic008G022000 Sobic008G022000 Sobic001G487600--Sobic008G022000 Sobic008G158600 Sobic008G158600 Sobic001G487600--Sobic008G158600 Sobic009G145600 Sobic009G145600 Sobic001G487600--Sobic009G145600 Sobic007G204700 Sobic007G204700 Sobic008G128200--Sobic007G204700 Sobic008G128066 Sobic008G128066 Sobic008G128200--Sobic008G128066 Sobic008G128200--Sobic010G045500 Sobic008G128200--Sobic003G364200 Sobic006G078900 Sobic006G078900 Sobic008G128200--Sobic006G078900 Sobic008G127933 Sobic008G127933 Sobic008G128200--Sobic008G127933 Sobic008G128200--Sobic005G215400 Sobic008G128200--Sobic005G069800 Sobic005G066100 Sobic005G066100 Sobic008G128200--Sobic005G066100 Sobic005G070200 Sobic005G070200 Sobic005G069800--Sobic005G070200 Sobic005G069700 Sobic005G069700 Sobic005G069800--Sobic005G069700 Sobic005G069800--Sobic004G022900 Sobic005G069800--Sobic008G128200 Sobic009G144800 Sobic009G144800 Sobic005G069800--Sobic009G144800 Sobic007G002700 Sobic007G002700 Sobic005G069800--Sobic007G002700 Sobic005G069800--Sobic001G487600 Sobic005G069800--Sobic003G441500 Sobic005G177600 Sobic005G177600 Sobic005G069800--Sobic005G177600 Sobic001G242100 Sobic001G242100 Sobic010G045500--Sobic001G242100 Sobic002G301900 Sobic002G301900 Sobic010G045500--Sobic002G301900 Sobic010G045500--Sobic006G234466 Sobic004G180700 Sobic004G180700 Sobic010G045500--Sobic004G180700 Sobic010G045500--Sobic005G215400 Sobic004G322800 Sobic004G322800 Sobic010G045500--Sobic004G322800 Sobic010G270700 Sobic010G270700 Sobic010G045500--Sobic010G270700 Sobic004G301600 Sobic004G301600 Sobic010G045500--Sobic004G301600 Sobic010G045500--Sobic008G128200 Sobic002G012300 Sobic002G012300 Sobic004G165100--Sobic002G012300 Sobic004G165100--Sobic008G026000 Sobic004G292600 Sobic004G292600 Sobic004G165100--Sobic004G292600 Sobic004G165100--Sobic008G036800 Sobic004G165100--Sobic008G158600 Sobic004G165100--Sobic008G022000 Sobic004G165100--Sobic001G487600 Sobic008G158501 Sobic008G158501 Sobic004G165100--Sobic008G158501 Sobic007G054900 Sobic007G054900 Sobic004G165100--Sobic007G054900 Sobic004G348800 Sobic004G348800 Sobic005G215400--Sobic004G348800 Sobic005G215400--Sobic007G204700 Sobic005G215400--Sobic010G045500 Sobic001G430100 Sobic001G430100 Sobic005G215400--Sobic001G430100 Sobic010G212500 Sobic010G212500 Sobic005G215400--Sobic010G212500 Sobic002G105300 Sobic002G105300 Sobic005G215400--Sobic002G105300 Sobic003G119500 Sobic003G119500 Sobic005G215400--Sobic003G119500 Sobic007G050200 Sobic007G050200 Sobic005G215400--Sobic007G050200 Sobic005G215400--Sobic004G322800 Sobic006G198000 Sobic006G198000 Sobic008G026000--Sobic006G198000 Sobic008G026000--Sobic004G292600 Sobic009G197100 Sobic009G197100 Sobic008G026000--Sobic009G197100 Sobic008G026000--Sobic004G165100 Sobic008G184700 Sobic008G184700 Sobic008G026000--Sobic008G184700 Sobic001G539300 Sobic001G539300 Sobic008G026000--Sobic001G539300 Sobic006G234466--Sobic010G045500 Sobic001G342400 Sobic001G342400 Sobic006G234466--Sobic001G342400 Sobic001G504100 Sobic001G504100 Sobic006G234466--Sobic001G504100 Sobic006G234466--Sobic002G301900 Sobic006G050800 Sobic006G050800 Sobic006G234466--Sobic006G050800 Sobic006G234466--Sobic010G270700 Sobic008G009400 Sobic008G009400 Sobic006G234466--Sobic008G009400 Sobic001G242000 Sobic001G242000 Sobic006G234466--Sobic001G242000 Sobic001G234900 Sobic001G234900 Sobic006G234466--Sobic001G234900
Octagon: transcription factors


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