Gene annotation
Transcriptome id Sobic.004G265000.1
Synonym Sb04g030310, FDH
Functional annotation erythronate-4-phosphate dehydrogenase domain containing protein, expressed
UniProt C5Y093
Pfam PF03446 PF00389
Panther DB PTHR10996 PTHR10996:SF171
NCBI CDD KOG0069; Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
KEGG Orthology K00122; formate dehydrogenase
Gene Ontology GO:0004616; phosphogluconate dehydrogenase (decarboxylating) activity GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G14780 : formate dehydrogenase
RAP-DB (Rice) LOC_Os06g29220.1 : erythronate-4-phosphate dehydrogenase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a021755 , Zm00025a050714
Brachypodium -
Barley HORVU6Hr1G069400.11 , HORVU6Hr1G069400.10 , HORVU6Hr1G069400.2 , HORVU6Hr1G069400.9 , HORVU6Hr1G069400.8 , HORVU6Hr1G069400.5 , HORVU6Hr1G069400.4 , HORVU6Hr1G069400.7 , HORVU6Hr1G069400.6 , HORVU6Hr1G069400.1 , HORVU6Hr1G069400.3
Wheat TraesCS6B02G302400 , TraesCS6B02G302400 , TraesCS6A02G274900 , TraesCS5D02G389600 , TraesCS6D02G255200 , TraesCS6D02G255200
Populus -


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cDNA sequences
Sobic.004G265000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G001500 pentatricopeptide containing protein, putative, expressed -
2 Sobic.009G208000 high level expression during drought stress(PubMedID : 27006630)@RHsf 10/Hsf sp 17(PubMedID : 27006630)@expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
3 Sobic.003G118500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
4 Sobic.008G005800 PMR5, putative, expressed -
5 Sobic.007G010400 - -
6 Sobic.003G150700 pectinacetylesterase domain containing protein, expressed -
7 Sobic.004G350600 AMP-binding domain containing protein, expressed -
8 Sobic.007G077466 - -
9 Sobic.009G160100 "Expressed in drought, salt and oxidative stress"(PubMedID : 29862293)@amino acid kinase, putative, expressed K12657: ALDH18A1, delta-1-pyrroline-5-carboxylate synthetase
10 Sobic.003G025300 lectin protein kinase family protein, putative, expressed -
11 Sobic.006G270300 Mlo family(PubMedID : 29491869)@MLO domain containing protein, putative, expressed K08472: mlo protein
12 Sobic.004G181000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.004G305300 - -
14 Sobic.003G079600 expressed protein -
15 Sobic.003G362800 - -
16 Sobic.001G191300 bile acid sodium symporter family protein, putative, expressed K03453: bile acid:Na+ symporter, BASS family
17 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
18 Sobic.001G350300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
19 Sobic.006G169600 expressed protein -
20 Sobic.009G199900 osFTL10 FT-Like10 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T


Gene co-expression network
sample Sobic004G265000 Sobic004G265000 Sobic002G001500 Sobic002G001500 Sobic004G265000--Sobic002G001500 Sobic009G208000 Sobic009G208000 Sobic004G265000--Sobic009G208000 Sobic003G118500 Sobic003G118500 Sobic004G265000--Sobic003G118500 Sobic008G005800 Sobic008G005800 Sobic004G265000--Sobic008G005800 Sobic007G010400 Sobic007G010400 Sobic004G265000--Sobic007G010400 Sobic003G150700 Sobic003G150700 Sobic004G265000--Sobic003G150700 Sobic004G350600 Sobic004G350600 Sobic004G265000--Sobic004G350600 Sobic007G077466 Sobic007G077466 Sobic004G265000--Sobic007G077466 Sobic009G160100 Sobic009G160100 Sobic004G265000--Sobic009G160100 Sobic003G362800 Sobic003G362800 Sobic002G001500--Sobic003G362800 Sobic001G113400 Sobic001G113400 Sobic002G001500--Sobic001G113400 Sobic004G181000 Sobic004G181000 Sobic002G001500--Sobic004G181000 Sobic009G223900 Sobic009G223900 Sobic002G001500--Sobic009G223900 Sobic002G001500--Sobic009G208000 Sobic008G103400 Sobic008G103400 Sobic002G001500--Sobic008G103400 Sobic002G085600 Sobic002G085600 Sobic002G001500--Sobic002G085600 Sobic003G155800 Sobic003G155800 Sobic002G001500--Sobic003G155800 Sobic004G173200 Sobic004G173200 Sobic002G001500--Sobic004G173200 Sobic009G208000--Sobic002G001500 Sobic003G040300 Sobic003G040300 Sobic009G208000--Sobic003G040300 Sobic009G208000--Sobic004G181000 Sobic009G208000--Sobic003G362800 Sobic009G208000--Sobic001G113400 Sobic009G208000--Sobic009G160100 Sobic009G208000--Sobic003G155800 Sobic009G208000--Sobic003G150700 Sobic009G208000--Sobic008G103400 Sobic004G305300 Sobic004G305300 Sobic003G118500--Sobic004G305300 Sobic001G104100 Sobic001G104100 Sobic003G118500--Sobic001G104100 Sobic001G191300 Sobic001G191300 Sobic003G118500--Sobic001G191300 Sobic004G310400 Sobic004G310400 Sobic003G118500--Sobic004G310400 Sobic001G350300 Sobic001G350300 Sobic003G118500--Sobic001G350300 Sobic004G026000 Sobic004G026000 Sobic003G118500--Sobic004G026000 Sobic001G096200 Sobic001G096200 Sobic003G118500--Sobic001G096200 Sobic003G118500--Sobic007G077466 Sobic003G118500--Sobic003G362800 Sobic008G005800--Sobic007G010400 Sobic008G005800--Sobic007G077466 Sobic001G503700 Sobic001G503700 Sobic008G005800--Sobic001G503700 Sobic006G118150 Sobic006G118150 Sobic008G005800--Sobic006G118150 Sobic008G005800--Sobic009G160100 Sobic008G005800--Sobic002G001500 Sobic003G025300 Sobic003G025300 Sobic008G005800--Sobic003G025300 Sobic009G192933 Sobic009G192933 Sobic008G005800--Sobic009G192933 Sobic008G005800--Sobic001G113400 Sobic003G149400 Sobic003G149400 Sobic007G010400--Sobic003G149400 Sobic001G367900 Sobic001G367900 Sobic007G010400--Sobic001G367900 Sobic007G010400--Sobic001G503700 Sobic007G010400--Sobic003G025300 Sobic007G010400--Sobic002G001500 Sobic007G010400--Sobic007G077466 Sobic007G010400--Sobic008G103400 Sobic009G122000 Sobic009G122000 Sobic007G010400--Sobic009G122000 Sobic007G010400--Sobic009G160100 Sobic003G150700--Sobic009G208000 Sobic003G079600 Sobic003G079600 Sobic003G150700--Sobic003G079600 Sobic004G203600 Sobic004G203600 Sobic003G150700--Sobic004G203600 Sobic003G150700--Sobic009G160100 Sobic006G121200 Sobic006G121200 Sobic003G150700--Sobic006G121200 Sobic006G169600 Sobic006G169600 Sobic003G150700--Sobic006G169600 Sobic003G106100 Sobic003G106100 Sobic003G150700--Sobic003G106100 Sobic001G033200 Sobic001G033200 Sobic003G150700--Sobic001G033200 Sobic006G008500 Sobic006G008500 Sobic003G150700--Sobic006G008500 Sobic004G350600--Sobic001G350300 Sobic002G399000 Sobic002G399000 Sobic004G350600--Sobic002G399000 Sobic004G350600--Sobic001G104100 Sobic001G028500 Sobic001G028500 Sobic004G350600--Sobic001G028500 Sobic006G170800 Sobic006G170800 Sobic004G350600--Sobic006G170800 Sobic009G199900 Sobic009G199900 Sobic004G350600--Sobic009G199900 Sobic004G350600--Sobic004G305300 Sobic002G320700 Sobic002G320700 Sobic004G350600--Sobic002G320700 Sobic004G350600--Sobic003G118500 Sobic007G077466--Sobic001G191300 Sobic007G077466--Sobic002G001500 Sobic007G077466--Sobic001G503700 Sobic007G077466--Sobic003G118500 Sobic007G077466--Sobic004G305300 Sobic007G077466--Sobic003G362800 Sobic002G110600 Sobic002G110600 Sobic007G077466--Sobic002G110600 Sobic010G000200 Sobic010G000200 Sobic007G077466--Sobic010G000200 Sobic007G077466--Sobic004G173200 Sobic009G160100--Sobic003G362800 Sobic009G160100--Sobic002G001500 Sobic009G160100--Sobic003G155800 Sobic009G160100--Sobic009G208000 Sobic009G160100--Sobic004G181000 Sobic009G160100--Sobic001G113400 Sobic009G160100--Sobic006G169600 Sobic009G160100--Sobic010G000200 Sobic009G160100--Sobic003G025300
Octagon: transcription factors


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