Gene annotation
Transcriptome id Sobic.009G208000.1
Synonym AT-HSFA4A, Hsf23;Heat shock transcription factor 23, Sb09g026440, HSFA4A, SbHsf23;Heat shock transcription factor 23, Heat Shock Transcription Factors, SbHsf23
Functional annotation high level expression during drought stress (PubMedID : 27006630)
RHsf 10/Hsf sp 17 (PubMedID : 27006630)
expressed high in San Chi San (an efficient nitrogen user) (PubMedID : 28697783)
HSF-type DNA-binding domain containing protein, expressed
UniProt C5Z1H3
Pfam PF00447
Panther DB PTHR10015 PTHR10015:SF161
NCBI CDD -
KEGG Orthology K09419; heat shock transcription factor, other eukaryote
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G45710 : winged-helix DNA-binding transcription factor family protein
RAP-DB (Rice) LOC_Os05g45410.1 : HSF-type DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045167 , Zm00025a005373 , Zm00025a015267 , Zm00025a038009 , Zm00025a040051 , Zm00025a051078 , Zm00025a008557 , Zm00025a048930 , Zm00025a002613 , Zm00025a044265 , Zm00025a033648 , Zm00025a020360
Brachypodium KQK12029 , KQK05247 , KQK14978 , KQK14979 , KQK05248 , PNT68735 , KQK18031 , KQK12714 , KQK18032 , KQJ99265 , PNT77358 , PNT72861 , PNT72862 , KQJ91133 , KQK12030 , PNT70844 , KQJ99684 , KQK21569 , KQK23525 , KQK09735 , KQK23526
Barley HORVU5Hr1G123770.4 , HORVU5Hr1G123770.1 , HORVU5Hr1G123770.3 , HORVU5Hr1G123770.2 , HORVU2Hr1G026020.1 , HORVU3Hr1G071550.1 , HORVU3Hr1G071550.3 , HORVU3Hr1G071550.2 , HORVU1Hr1G081300.5 , HORVU1Hr1G081300.4 , HORVU1Hr1G081300.3 , HORVU1Hr1G081300.2 , HORVU3Hr1G071550.5 , HORVU3Hr1G071550.4 , HORVU1Hr1G081300.1 , HORVU7Hr1G088920.2 , HORVU7Hr1G088920.3 , HORVU7Hr1G088920.1 , HORVU5Hr1G080840.1 , HORVU5Hr1G105770.4 , HORVU5Hr1G105770.1 , HORVU5Hr1G105770.3 , HORVU5Hr1G105770.2
Wheat TraesCS5B02G315600 , TraesCS5B02G315600 , TraesCS3B02G323800 , TraesCS2D02G211400 , TraesCS2D02G211400 , TraesCS4A02G322300 , TraesCS1A02G350400 , TraesCS1A02G350400 , TraesCS3A02G289200 , TraesCS2A02G146600 , TraesCS5B02G556200 , TraesCS7A02G355300 , TraesCS7D02G367700 , TraesCS2B02G171900 , TraesCS2B02G232000 , TraesCS2B02G232000 , TraesCS5A02G314700 , TraesCS2A02G204500 , TraesCS2A02G204500 , TraesCS5D02G321000 , TraesCS5D02G553300 , TraesCS7B02G272500 , TraesCS2D02G151200
Populus PNT39523


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G001500 pentatricopeptide containing protein, putative, expressed -
2 Sobic.003G040300 cytochrome P450, putative, expressed -
3 Sobic.004G181000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.003G362800 - -
5 Sobic.001G113400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@seed maturation protein PM41, putative, expressed -
6 Sobic.009G160100 "Expressed in drought, salt and oxidative stress"(PubMedID : 29862293)@amino acid kinase, putative, expressed K12657: ALDH18A1, delta-1-pyrroline-5-carboxylate synthetase
7 Sobic.003G155800 dnaJ homolog subfamily B member 11 precursor, putative, expressed K09517: DnaJ homolog subfamily B member 11
8 Sobic.003G150700 pectinacetylesterase domain containing protein, expressed -
9 Sobic.008G103400 universal stress protein domain containing protein, putative, expressed -
10 Sobic.003G001650 - -
11 Sobic.005G048800 expressed protein -
12 Sobic.009G199900 osFTL10 FT-Like10 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
13 Sobic.009G223900 protein binding protein, putative, expressed -
14 Sobic.004G144300 - -
15 Sobic.001G104100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ACT domain containing protein, expressed -
16 Sobic.003G079600 expressed protein -
17 Sobic.008G192900 -(PubMedID : 29751546)@sodium/hydrogen exchanger 7, putative, expressed -
18 Sobic.003G025300 lectin protein kinase family protein, putative, expressed -
19 Sobic.001G454600 expressed protein -
20 Sobic.007G077466 - -


Gene co-expression network
sample Sobic009G208000 Sobic009G208000 Sobic002G001500 Sobic002G001500 Sobic009G208000--Sobic002G001500 Sobic003G040300 Sobic003G040300 Sobic009G208000--Sobic003G040300 Sobic004G181000 Sobic004G181000 Sobic009G208000--Sobic004G181000 Sobic003G362800 Sobic003G362800 Sobic009G208000--Sobic003G362800 Sobic001G113400 Sobic001G113400 Sobic009G208000--Sobic001G113400 Sobic009G160100 Sobic009G160100 Sobic009G208000--Sobic009G160100 Sobic003G155800 Sobic003G155800 Sobic009G208000--Sobic003G155800 Sobic003G150700 Sobic003G150700 Sobic009G208000--Sobic003G150700 Sobic008G103400 Sobic008G103400 Sobic009G208000--Sobic008G103400 Sobic002G001500--Sobic003G362800 Sobic002G001500--Sobic001G113400 Sobic002G001500--Sobic004G181000 Sobic009G223900 Sobic009G223900 Sobic002G001500--Sobic009G223900 Sobic002G001500--Sobic009G208000 Sobic002G001500--Sobic008G103400 Sobic002G085600 Sobic002G085600 Sobic002G001500--Sobic002G085600 Sobic002G001500--Sobic003G155800 Sobic004G173200 Sobic004G173200 Sobic002G001500--Sobic004G173200 Sobic003G040300--Sobic009G208000 Sobic001G454600 Sobic001G454600 Sobic003G040300--Sobic001G454600 Sobic003G040300--Sobic002G001500 Sobic001G090700 Sobic001G090700 Sobic003G040300--Sobic001G090700 Sobic003G040300--Sobic004G181000 Sobic003G025300 Sobic003G025300 Sobic003G040300--Sobic003G025300 Sobic003G040300--Sobic008G103400 Sobic008G170800 Sobic008G170800 Sobic003G040300--Sobic008G170800 Sobic003G040300--Sobic003G362800 Sobic004G181000--Sobic002G001500 Sobic004G181000--Sobic008G103400 Sobic004G181000--Sobic003G362800 Sobic004G181000--Sobic009G223900 Sobic004G181000--Sobic003G155800 Sobic004G181000--Sobic009G208000 Sobic003G251900 Sobic003G251900 Sobic004G181000--Sobic003G251900 Sobic002G234800 Sobic002G234800 Sobic004G181000--Sobic002G234800 Sobic004G181000--Sobic001G113400 Sobic003G362800--Sobic002G001500 Sobic003G362800--Sobic001G113400 Sobic003G362800--Sobic003G155800 Sobic003G362800--Sobic004G181000 Sobic004G144300 Sobic004G144300 Sobic003G362800--Sobic004G144300 Sobic003G362800--Sobic008G103400 Sobic010G000200 Sobic010G000200 Sobic003G362800--Sobic010G000200 Sobic003G362800--Sobic004G173200 Sobic003G001650 Sobic003G001650 Sobic003G362800--Sobic003G001650 Sobic001G113400--Sobic003G362800 Sobic001G113400--Sobic002G001500 Sobic001G113400--Sobic002G085600 Sobic001G113400--Sobic009G208000 Sobic001G113400--Sobic004G144300 Sobic001G113400--Sobic003G155800 Sobic001G113400--Sobic009G223900 Sobic001G113400--Sobic004G181000 Sobic009G192933 Sobic009G192933 Sobic001G113400--Sobic009G192933 Sobic009G160100--Sobic003G362800 Sobic009G160100--Sobic002G001500 Sobic009G160100--Sobic003G155800 Sobic009G160100--Sobic009G208000 Sobic009G160100--Sobic004G181000 Sobic009G160100--Sobic001G113400 Sobic006G169600 Sobic006G169600 Sobic009G160100--Sobic006G169600 Sobic009G160100--Sobic010G000200 Sobic009G160100--Sobic003G025300 Sobic003G155800--Sobic003G362800 Sobic003G155800--Sobic004G181000 Sobic003G253700 Sobic003G253700 Sobic003G155800--Sobic003G253700 Sobic005G063600 Sobic005G063600 Sobic003G155800--Sobic005G063600 Sobic003G155800--Sobic009G223900 Sobic009G252600 Sobic009G252600 Sobic003G155800--Sobic009G252600 Sobic003G155800--Sobic002G001500 Sobic001G520000 Sobic001G520000 Sobic003G155800--Sobic001G520000 Sobic002G206900 Sobic002G206900 Sobic003G155800--Sobic002G206900 Sobic003G150700--Sobic009G208000 Sobic003G079600 Sobic003G079600 Sobic003G150700--Sobic003G079600 Sobic004G203600 Sobic004G203600 Sobic003G150700--Sobic004G203600 Sobic003G150700--Sobic009G160100 Sobic006G121200 Sobic006G121200 Sobic003G150700--Sobic006G121200 Sobic003G150700--Sobic006G169600 Sobic003G106100 Sobic003G106100 Sobic003G150700--Sobic003G106100 Sobic001G033200 Sobic001G033200 Sobic003G150700--Sobic001G033200 Sobic006G008500 Sobic006G008500 Sobic003G150700--Sobic006G008500 Sobic002G110600 Sobic002G110600 Sobic008G103400--Sobic002G110600 Sobic008G103400--Sobic004G181000 Sobic008G192900 Sobic008G192900 Sobic008G103400--Sobic008G192900 Sobic008G103400--Sobic003G362800 Sobic010G012200 Sobic010G012200 Sobic008G103400--Sobic010G012200 Sobic008G103400--Sobic002G001500 Sobic008G103400--Sobic009G223900 Sobic008G016800 Sobic008G016800 Sobic008G103400--Sobic008G016800 Sobic004G315400 Sobic004G315400 Sobic008G103400--Sobic004G315400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.