Gene annotation
Transcriptome id Sobic.004G288500.1
Synonym Sb04g032410, ATT1, CYP86A2
Functional annotation cytochrome P450, putative, expressed
UniProt A0A1Z5RPI2
Pfam PF00067
Panther DB PTHR24296 PTHR24296:SF16
NCBI CDD KOG0157; Cytochrome P450 CYP4/CYP19/CYP26 subfamilies
KEGG Orthology K15398; fatty acid omega-hydroxylase
Gene Ontology GO:0016705; oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT1G01600 : cytochrome P450, family 86, subfamily A, polypeptide 4
RAP-DB (Rice) LOC_Os02g44654.2 : cytochrome P450, putative, expressed
MaizeGDB (Corn) Zm00025a010229 , Zm00025a009547 , Zm00025a039610 , Zm00025a021442 , Zm00025a002501 , Zm00025a028488
Brachypodium KQK10634 , KQK00714
Barley HORVU6Hr1G064170.1 , HORVU3Hr1G085020.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G288500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G037400 expressed protein -
2 Sobic.009G134000 receptor-like protein kinase precursor, putative, expressed -
3 Sobic.005G110600 glycosyl hydrolase, putative, expressed K01183: chitinase
4 Sobic.001G253900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
5 Sobic.001G451800 atypical receptor-like kinase MARK, putative, expressed -
6 Sobic.003G277200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
7 Sobic.003G419600 disease resistance protein RGA2, putative, expressed -
8 Sobic.001G140800 helix-loop-helix DNA-binding protein, putative, expressed -
9 Sobic.005G130700 expressed protein -
10 Sobic.003G013000 inactive receptor kinase At2g26730 precursor, putative, expressed -
11 Sobic.001G388000 GTPase-activating protein, putative, expressed -
12 Sobic.010G234900 armadillo/beta-catenin repeat family protein, putative, expressed -
13 Sobic.005G122800 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
14 Sobic.003G031400 harpin-induced protein 1 domain containing protein, expressed -
15 Sobic.004G150800 expressed protein -
16 Sobic.010G007000 Leucine Rich Repeat family protein, expressed -
17 Sobic.008G039800 rhoGAP domain containing protein, expressed -
18 Sobic.002G064600 expressed protein -
19 Sobic.001G047900 expressed protein -
20 Sobic.004G237300 PCF-like (ClassI) Subclade 5 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP-domain protein, putative, expressed -


Gene co-expression network
sample Sobic004G288500 Sobic004G288500 Sobic001G037400 Sobic001G037400 Sobic004G288500--Sobic001G037400 Sobic009G134000 Sobic009G134000 Sobic004G288500--Sobic009G134000 Sobic005G110600 Sobic005G110600 Sobic004G288500--Sobic005G110600 Sobic001G253900 Sobic001G253900 Sobic004G288500--Sobic001G253900 Sobic001G451800 Sobic001G451800 Sobic004G288500--Sobic001G451800 Sobic003G277200 Sobic003G277200 Sobic004G288500--Sobic003G277200 Sobic003G419600 Sobic003G419600 Sobic004G288500--Sobic003G419600 Sobic001G140800 Sobic001G140800 Sobic004G288500--Sobic001G140800 Sobic005G130700 Sobic005G130700 Sobic004G288500--Sobic005G130700 Sobic004G243800 Sobic004G243800 Sobic001G037400--Sobic004G243800 Sobic008G039800 Sobic008G039800 Sobic001G037400--Sobic008G039800 Sobic001G037400--Sobic003G277200 Sobic001G037400--Sobic003G419600 Sobic001G037400--Sobic005G110600 Sobic001G037400--Sobic004G288500 Sobic001G196000 Sobic001G196000 Sobic001G037400--Sobic001G196000 Sobic003G006100 Sobic003G006100 Sobic001G037400--Sobic003G006100 Sobic009G211800 Sobic009G211800 Sobic001G037400--Sobic009G211800 Sobic007G012800 Sobic007G012800 Sobic009G134000--Sobic007G012800 Sobic010G143300 Sobic010G143300 Sobic009G134000--Sobic010G143300 Sobic009G154100 Sobic009G154100 Sobic009G134000--Sobic009G154100 Sobic009G134000--Sobic003G277200 Sobic006G178800 Sobic006G178800 Sobic009G134000--Sobic006G178800 Sobic010G107200 Sobic010G107200 Sobic009G134000--Sobic010G107200 Sobic001G389600 Sobic001G389600 Sobic009G134000--Sobic001G389600 Sobic001G478100 Sobic001G478100 Sobic009G134000--Sobic001G478100 Sobic009G134000--Sobic005G130700 Sobic005G110600--Sobic005G130700 Sobic006G062300 Sobic006G062300 Sobic005G110600--Sobic006G062300 Sobic004G297950 Sobic004G297950 Sobic005G110600--Sobic004G297950 Sobic005G110600--Sobic001G140800 Sobic005G110600--Sobic003G419600 Sobic010G133932 Sobic010G133932 Sobic005G110600--Sobic010G133932 Sobic010G007000 Sobic010G007000 Sobic005G110600--Sobic010G007000 Sobic003G269100 Sobic003G269100 Sobic005G110600--Sobic003G269100 Sobic001G484000 Sobic001G484000 Sobic005G110600--Sobic001G484000 Sobic001G253900--Sobic001G451800 Sobic007G162000 Sobic007G162000 Sobic001G253900--Sobic007G162000 Sobic007G113900 Sobic007G113900 Sobic001G253900--Sobic007G113900 Sobic008G156900 Sobic008G156900 Sobic001G253900--Sobic008G156900 Sobic003G300100 Sobic003G300100 Sobic001G253900--Sobic003G300100 Sobic001G253900--Sobic004G288500 Sobic001G253900--Sobic009G134000 Sobic002G202500 Sobic002G202500 Sobic001G253900--Sobic002G202500 Sobic008G083300 Sobic008G083300 Sobic001G253900--Sobic008G083300 Sobic001G451800--Sobic001G253900 Sobic003G400600 Sobic003G400600 Sobic001G451800--Sobic003G400600 Sobic001G451800--Sobic007G113900 Sobic003G420100 Sobic003G420100 Sobic001G451800--Sobic003G420100 Sobic001G451800--Sobic008G156900 Sobic001G451800--Sobic003G277200 Sobic010G104400 Sobic010G104400 Sobic001G451800--Sobic010G104400 Sobic006G214000 Sobic006G214000 Sobic001G451800--Sobic006G214000 Sobic010G181500 Sobic010G181500 Sobic001G451800--Sobic010G181500 Sobic002G419200 Sobic002G419200 Sobic003G277200--Sobic002G419200 Sobic003G338200 Sobic003G338200 Sobic003G277200--Sobic003G338200 Sobic003G116100 Sobic003G116100 Sobic003G277200--Sobic003G116100 Sobic003G277200--Sobic008G039800 Sobic010G216600 Sobic010G216600 Sobic003G277200--Sobic010G216600 Sobic001G345200 Sobic001G345200 Sobic003G277200--Sobic001G345200 Sobic001G285200 Sobic001G285200 Sobic003G277200--Sobic001G285200 Sobic003G277200--Sobic007G012800 Sobic003G277200--Sobic001G037400 Sobic003G419600--Sobic005G130700 Sobic003G419600--Sobic010G007000 Sobic003G419600--Sobic005G110600 Sobic003G419600--Sobic006G062300 Sobic003G419600--Sobic001G037400 Sobic003G419600--Sobic003G277200 Sobic007G111700 Sobic007G111700 Sobic003G419600--Sobic007G111700 Sobic003G419600--Sobic003G006100 Sobic010G116100 Sobic010G116100 Sobic003G419600--Sobic010G116100 Sobic001G140800--Sobic005G110600 Sobic001G388000 Sobic001G388000 Sobic001G140800--Sobic001G388000 Sobic005G145100 Sobic005G145100 Sobic001G140800--Sobic005G145100 Sobic001G140800--Sobic010G133932 Sobic005G087400 Sobic005G087400 Sobic001G140800--Sobic005G087400 Sobic001G129600 Sobic001G129600 Sobic001G140800--Sobic001G129600 Sobic001G140800--Sobic005G130700 Sobic001G140800--Sobic001G484000 Sobic001G140800--Sobic006G062300 Sobic005G130700--Sobic005G110600 Sobic005G130700--Sobic006G062300 Sobic005G130700--Sobic010G116100 Sobic005G130700--Sobic003G419600 Sobic005G130700--Sobic001G140800 Sobic005G130700--Sobic003G277200 Sobic005G130700--Sobic009G134000 Sobic006G245600 Sobic006G245600 Sobic005G130700--Sobic006G245600 Sobic003G272900 Sobic003G272900 Sobic005G130700--Sobic003G272900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.