Gene annotation
Transcriptome id Sobic.004G320800.2
Synonym Sb04g035120
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
heat shock protein DnaJ, putative, expressed
UniProt C5XTP3
Pfam PF00226
Panther DB PTHR24078 PTHR24078:SF247
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14200 : Chaperone DnaJ-domain superfamily protein
RAP-DB (Rice) LOC_Os02g54130.2 : heat shock protein DnaJ, putative, expressed
MaizeGDB (Corn) Zm00025a022371 , Zm00025a033011
Brachypodium KQK02056 , KQK02057
Barley HORVU6Hr1G082350.10 , HORVU6Hr1G082350.11 , HORVU7Hr1G033430.8 , HORVU7Hr1G033430.9 , HORVU7Hr1G033430.6 , HORVU7Hr1G033430.7 , HORVU7Hr1G033430.4 , HORVU7Hr1G033430.5 , HORVU7Hr1G033430.2 , HORVU7Hr1G033430.3 , HORVU7Hr1G033430.1 , HORVU6Hr1G029700.1 , HORVU6Hr1G082350.2 , HORVU6Hr1G082350.3 , HORVU6Hr1G082350.1 , HORVU6Hr1G082350.6 , HORVU6Hr1G082350.7 , HORVU6Hr1G082350.4 , HORVU6Hr1G082350.5 , HORVU6Hr1G082350.8 , HORVU6Hr1G082350.9 , HORVU7Hr1G033430.10 , HORVU7Hr1G033430.11 , HORVU7Hr1G033430.12
Wheat TraesCS7B02G064100 , TraesCS6D02G322200 , TraesCS7B02G064000 , TraesCS6D02G322200 , TraesCS7D02G160400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G313800 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
2 Sobic.005G026100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydroxymethylglutaryl-CoA lyase, putative, expressed K01640: E4.1.3.4, HMGCL, hydroxymethylglutaryl-CoA lyase
3 Sobic.001G358000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
4 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1
5 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase
6 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -
7 Sobic.003G367300 actin, putative, expressed K10355: actin, other eukaryote
8 Sobic.003G002400 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
9 Sobic.001G425800 src homology-3 domain protein 3, putative, expressed -
10 Sobic.001G078800 similar to Serine/threonine-protein kinase SAPK8(PubMedID : 29862293)@CAMK_CAMK_like.22 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
11 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
12 Sobic.001G421300 protein kinase APK1A, chloroplast precursor, putative, expressed -
13 Sobic.004G247000 -(PubMedID : 26976818)@"Gln-4(Ortholog in maize:Martin et al., 2006)"(PubMedID : 31659887)@glutamine synthetase, catalytic domain containing protein, expressed K01915: glnA, glutamine synthetase
14 Sobic.004G146800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
15 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
16 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
17 Sobic.001G436000 expressed protein -
18 Sobic.006G130800 transporter family protein, putative, expressed K08150: SLC2A13, MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
19 Sobic.001G328200 interferon-related developmental regulator, putative, expressed -
20 Sobic.001G472600 gibberellin response modulator protein, putative, expressed -


Gene co-expression network
sample Sobic004G320800 Sobic004G320800 Sobic002G313800 Sobic002G313800 Sobic004G320800--Sobic002G313800 Sobic005G026100 Sobic005G026100 Sobic004G320800--Sobic005G026100 Sobic001G358000 Sobic001G358000 Sobic004G320800--Sobic001G358000 Sobic007G006900 Sobic007G006900 Sobic004G320800--Sobic007G006900 Sobic001G434900 Sobic001G434900 Sobic004G320800--Sobic001G434900 Sobic002G293300 Sobic002G293300 Sobic004G320800--Sobic002G293300 Sobic003G367300 Sobic003G367300 Sobic004G320800--Sobic003G367300 Sobic003G002400 Sobic003G002400 Sobic004G320800--Sobic003G002400 Sobic001G425800 Sobic001G425800 Sobic004G320800--Sobic001G425800 Sobic002G313800--Sobic002G293300 Sobic002G313800--Sobic003G367300 Sobic002G313800--Sobic001G434900 Sobic002G313800--Sobic004G320800 Sobic002G313800--Sobic003G002400 Sobic004G247000 Sobic004G247000 Sobic002G313800--Sobic004G247000 Sobic008G016900 Sobic008G016900 Sobic002G313800--Sobic008G016900 Sobic004G350300 Sobic004G350300 Sobic002G313800--Sobic004G350300 Sobic001G162100 Sobic001G162100 Sobic002G313800--Sobic001G162100 Sobic004G146800 Sobic004G146800 Sobic005G026100--Sobic004G146800 Sobic006G209400 Sobic006G209400 Sobic005G026100--Sobic006G209400 Sobic009G231200 Sobic009G231200 Sobic005G026100--Sobic009G231200 Sobic010G267500 Sobic010G267500 Sobic005G026100--Sobic010G267500 Sobic001G541100 Sobic001G541100 Sobic005G026100--Sobic001G541100 Sobic001G391600 Sobic001G391600 Sobic005G026100--Sobic001G391600 Sobic009G200800 Sobic009G200800 Sobic005G026100--Sobic009G200800 Sobic001G333600 Sobic001G333600 Sobic005G026100--Sobic001G333600 Sobic008G188700 Sobic008G188700 Sobic005G026100--Sobic008G188700 Sobic009G165800 Sobic009G165800 Sobic001G358000--Sobic009G165800 Sobic004G353200 Sobic004G353200 Sobic001G358000--Sobic004G353200 Sobic001G358000--Sobic004G146800 Sobic010G223700 Sobic010G223700 Sobic001G358000--Sobic010G223700 Sobic004G121100 Sobic004G121100 Sobic001G358000--Sobic004G121100 Sobic001G113000 Sobic001G113000 Sobic001G358000--Sobic001G113000 Sobic001G080700 Sobic001G080700 Sobic001G358000--Sobic001G080700 Sobic006G200600 Sobic006G200600 Sobic001G358000--Sobic006G200600 Sobic007G019800 Sobic007G019800 Sobic001G358000--Sobic007G019800 Sobic002G134600 Sobic002G134600 Sobic007G006900--Sobic002G134600 Sobic007G006900--Sobic001G425800 Sobic003G328600 Sobic003G328600 Sobic007G006900--Sobic003G328600 Sobic001G362200 Sobic001G362200 Sobic007G006900--Sobic001G362200 Sobic002G400200 Sobic002G400200 Sobic007G006900--Sobic002G400200 Sobic010G249100 Sobic010G249100 Sobic007G006900--Sobic010G249100 Sobic002G067600 Sobic002G067600 Sobic007G006900--Sobic002G067600 Sobic009G238850 Sobic009G238850 Sobic007G006900--Sobic009G238850 Sobic003G119800 Sobic003G119800 Sobic007G006900--Sobic003G119800 Sobic002G122700 Sobic002G122700 Sobic001G434900--Sobic002G122700 Sobic001G434900--Sobic004G350300 Sobic001G434900--Sobic003G002400 Sobic001G434900--Sobic003G367300 Sobic006G225600 Sobic006G225600 Sobic001G434900--Sobic006G225600 Sobic005G176000 Sobic005G176000 Sobic001G434900--Sobic005G176000 Sobic003G248600 Sobic003G248600 Sobic001G434900--Sobic003G248600 Sobic001G434900--Sobic001G162100 Sobic004G274400 Sobic004G274400 Sobic001G434900--Sobic004G274400 Sobic002G293300--Sobic003G367300 Sobic001G436000 Sobic001G436000 Sobic002G293300--Sobic001G436000 Sobic002G379400 Sobic002G379400 Sobic002G293300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G293300--Sobic010G052800 Sobic002G293300--Sobic009G231200 Sobic002G330300 Sobic002G330300 Sobic002G293300--Sobic002G330300 Sobic001G082900 Sobic001G082900 Sobic002G293300--Sobic001G082900 Sobic004G025000 Sobic004G025000 Sobic002G293300--Sobic004G025000 Sobic001G516100 Sobic001G516100 Sobic002G293300--Sobic001G516100 Sobic003G367300--Sobic002G293300 Sobic003G367300--Sobic001G516100 Sobic003G367300--Sobic001G434900 Sobic007G006600 Sobic007G006600 Sobic003G367300--Sobic007G006600 Sobic004G271700 Sobic004G271700 Sobic003G367300--Sobic004G271700 Sobic009G079300 Sobic009G079300 Sobic003G367300--Sobic009G079300 Sobic003G367300--Sobic001G436000 Sobic003G367300--Sobic003G002400 Sobic003G367300--Sobic001G162100 Sobic003G002400--Sobic004G350300 Sobic003G002400--Sobic004G274400 Sobic003G002400--Sobic001G434900 Sobic002G045300 Sobic002G045300 Sobic003G002400--Sobic002G045300 Sobic003G220600 Sobic003G220600 Sobic003G002400--Sobic003G220600 Sobic003G002400--Sobic004G271700 Sobic001G122500 Sobic001G122500 Sobic003G002400--Sobic001G122500 Sobic006G033200 Sobic006G033200 Sobic003G002400--Sobic006G033200 Sobic010G101500 Sobic010G101500 Sobic003G002400--Sobic010G101500 Sobic001G425800--Sobic002G134600 Sobic001G425800--Sobic010G223700 Sobic001G425800--Sobic007G006900 Sobic008G046500 Sobic008G046500 Sobic001G425800--Sobic008G046500 Sobic001G425800--Sobic010G249100 Sobic001G226700 Sobic001G226700 Sobic001G425800--Sobic001G226700 Sobic002G257200 Sobic002G257200 Sobic001G425800--Sobic002G257200 Sobic001G425800--Sobic004G146800 Sobic008G124900 Sobic008G124900 Sobic001G425800--Sobic008G124900
Octagon: transcription factors


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