Gene annotation
Transcriptome id Sobic.005G140100.1
Synonym
Functional annotation -
UniProt A0A1B6PSC7
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G140100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G104300 - -
2 Sobic.004G243900 E2F family transcription factor protein, putative, expressed -
3 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
4 Sobic.006G116500 expressed protein -
5 Sobic.010G165900 - -
6 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
7 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
8 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
9 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
10 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
11 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
12 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
13 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
14 Sobic.002G230800 expressed protein -
15 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
16 Sobic.008G090100 - -
17 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
18 Sobic.003G387700 expressed protein -
19 Sobic.005G157300 protein binding protein, putative, expressed -
20 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1


Gene co-expression network
sample Sobic005G140100 Sobic005G140100 Sobic005G104300 Sobic005G104300 Sobic005G140100--Sobic005G104300 Sobic004G243900 Sobic004G243900 Sobic005G140100--Sobic004G243900 Sobic003G179500 Sobic003G179500 Sobic005G140100--Sobic003G179500 Sobic006G116500 Sobic006G116500 Sobic005G140100--Sobic006G116500 Sobic010G165900 Sobic010G165900 Sobic005G140100--Sobic010G165900 Sobic003G183700 Sobic003G183700 Sobic005G140100--Sobic003G183700 Sobic008G129200 Sobic008G129200 Sobic005G140100--Sobic008G129200 Sobic004G331600 Sobic004G331600 Sobic005G140100--Sobic004G331600 Sobic006G051000 Sobic006G051000 Sobic005G140100--Sobic006G051000 Sobic001G025900 Sobic001G025900 Sobic005G104300--Sobic001G025900 Sobic002G317700 Sobic002G317700 Sobic005G104300--Sobic002G317700 Sobic007G121650 Sobic007G121650 Sobic005G104300--Sobic007G121650 Sobic007G184100 Sobic007G184100 Sobic005G104300--Sobic007G184100 Sobic005G104300--Sobic004G243900 Sobic002G186966 Sobic002G186966 Sobic005G104300--Sobic002G186966 Sobic005G104300--Sobic005G140100 Sobic004G190500 Sobic004G190500 Sobic005G104300--Sobic004G190500 Sobic004G321400 Sobic004G321400 Sobic005G104300--Sobic004G321400 Sobic009G087000 Sobic009G087000 Sobic004G243900--Sobic009G087000 Sobic004G243900--Sobic003G183700 Sobic004G243900--Sobic003G179500 Sobic004G243900--Sobic006G051000 Sobic005G110535 Sobic005G110535 Sobic004G243900--Sobic005G110535 Sobic003G292700 Sobic003G292700 Sobic004G243900--Sobic003G292700 Sobic010G147700 Sobic010G147700 Sobic004G243900--Sobic010G147700 Sobic003G289800 Sobic003G289800 Sobic004G243900--Sobic003G289800 Sobic004G243900--Sobic008G129200 Sobic003G179500--Sobic003G183700 Sobic010G103700 Sobic010G103700 Sobic003G179500--Sobic010G103700 Sobic010G105400 Sobic010G105400 Sobic003G179500--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100 Sobic001G456500 Sobic001G456500 Sobic006G116500--Sobic001G456500 Sobic004G355500 Sobic004G355500 Sobic006G116500--Sobic004G355500 Sobic001G169800 Sobic001G169800 Sobic006G116500--Sobic001G169800 Sobic001G070300 Sobic001G070300 Sobic006G116500--Sobic001G070300 Sobic006G116500--Sobic003G179500 Sobic006G116500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic006G116500--Sobic002G223900 Sobic006G116500--Sobic004G331600 Sobic006G116500--Sobic004G047100 Sobic010G165700 Sobic010G165700 Sobic010G165900--Sobic010G165700 Sobic002G101100 Sobic002G101100 Sobic010G165900--Sobic002G101100 Sobic005G098900 Sobic005G098900 Sobic010G165900--Sobic005G098900 Sobic010G248500 Sobic010G248500 Sobic010G165900--Sobic010G248500 Sobic001G318100 Sobic001G318100 Sobic010G165900--Sobic001G318100 Sobic003G401800 Sobic003G401800 Sobic010G165900--Sobic003G401800 Sobic010G165800 Sobic010G165800 Sobic010G165900--Sobic010G165800 Sobic008G090100 Sobic008G090100 Sobic010G165900--Sobic008G090100 Sobic008G127550 Sobic008G127550 Sobic010G165900--Sobic008G127550 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic006G195500 Sobic006G195500 Sobic003G183700--Sobic006G195500 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic001G083300 Sobic001G083300 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic008G129200--Sobic006G116500 Sobic004G331600--Sobic001G456500 Sobic004G331600--Sobic008G129200 Sobic004G331600--Sobic010G054600 Sobic004G331600--Sobic009G087000 Sobic001G142000 Sobic001G142000 Sobic004G331600--Sobic001G142000 Sobic004G331600--Sobic002G223900 Sobic004G331600--Sobic003G183700 Sobic004G331600--Sobic010G147700 Sobic007G007800 Sobic007G007800 Sobic004G331600--Sobic007G007800 Sobic006G051000--Sobic003G183700 Sobic006G051000--Sobic006G195500 Sobic006G051000--Sobic010G103700 Sobic006G196600 Sobic006G196600 Sobic006G051000--Sobic006G196600 Sobic006G051000--Sobic003G179500 Sobic006G051000--Sobic009G087000 Sobic009G109300 Sobic009G109300 Sobic006G051000--Sobic009G109300 Sobic006G051000--Sobic008G129200 Sobic006G051000--Sobic005G110535
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.