Gene annotation
Transcriptome id Sobic.005G231600.1
Synonym LOW GERMINATION STIMULANT 1 , RCA, Sb05g027880, LGS1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
"ADP/ ATP binding enzyme, RuBisCO activator (Os)" (PubMedID : 27208977)
Up-reguralion under heat (PubMedID : 24916767)
Up-reguralion under combine stress of drought and heat (PubMedID : 24916767)
sulfotransferase (PubMedID : 28396420)
AAA-type ATPase family protein, putative, expressed
UniProt C5Y1T6
Pfam PF00004
Panther DB PTHR32429 PTHR32429:SF8
NCBI CDD KOG0651; 26S proteasome regulatory complex, ATPase RPT4
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G39730 : rubisco activase
RAP-DB (Rice) LOC_Os11g47970.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a029069 , Zm00025a029070
Brachypodium PNT62864 , KQJ87037 , KQJ87034 , KQJ87035 , KQJ87036
Barley HORVU4Hr1G027260.20 , HORVU4Hr1G027260.7 , HORVU4Hr1G027260.1 , HORVU4Hr1G027260.2 , HORVU4Hr1G027260.8 , HORVU4Hr1G027260.11 , HORVU4Hr1G027260.10 , HORVU4Hr1G027260.13 , HORVU4Hr1G027260.12 , HORVU4Hr1G027260.15 , HORVU4Hr1G027260.14 , HORVU4Hr1G027260.17 , HORVU4Hr1G027260.16 , HORVU4Hr1G027260.19 , HORVU4Hr1G027260.18 , HORVU4Hr1G027260.5 , HORVU4Hr1G027260.4 , HORVU4Hr1G027260.3 , HORVU4Hr1G027260.9 , HORVU4Hr1G027260.6
Wheat TraesCS4A02G177600 , TraesCS4D02G134900 , TraesCS4B02G140300 , TraesCS4B02G140300 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4D02G135000 , TraesCS4B02G140200 , TraesCS4B02G140200 , TraesCS4A02G177500 , TraesCS4A02G177500 , TraesCS4A02G177500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G202400 expressed protein -
2 Sobic.004G051100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
3 Sobic.004G343100 YCF37, putative, expressed -
4 Sobic.004G019400 Protein terpene synthase 14 (At)(PubMedID : 27208977)@"Protein terpene synthase 14, S-linalool synthase (Os)"(PubMedID : 27208977)@terpene synthase, putative, expressed -
5 Sobic.005G192600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
6 Sobic.010G171900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-ascorbate oxidase (Os)(PubMedID : 27208977)@L-ascorbate oxidase precursor, putative, expressed -
7 Sobic.005G167500 resistance protein, putative, expressed -
8 Sobic.008G080600 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
9 Sobic.005G118300 plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.005G186500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed K08249: hydroxymandelonitrile lyase
11 Sobic.004G351400 O-methyltransferase, putative, expressed -
12 Sobic.005G217900 carboxyl-terminal peptidase, putative, expressed -
13 Sobic.001G317400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.006G020200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein 10-deacetylbaccatin III 10-O-acetyltransferase (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
15 Sobic.004G182700 OsFBK8 - F-box domain and kelch repeat containing protein, expressed -
16 Sobic.010G225600 - -
17 Sobic.001G391900 nifU, putative, expressed -
18 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
19 Sobic.004G028200 UP-9A, putative, expressed -
20 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30


Gene co-expression network
sample Sobic005G231600 Sobic005G231600 Sobic009G202400 Sobic009G202400 Sobic005G231600--Sobic009G202400 Sobic004G051100 Sobic004G051100 Sobic005G231600--Sobic004G051100 Sobic004G343100 Sobic004G343100 Sobic005G231600--Sobic004G343100 Sobic004G019400 Sobic004G019400 Sobic005G231600--Sobic004G019400 Sobic005G192600 Sobic005G192600 Sobic005G231600--Sobic005G192600 Sobic010G171900 Sobic010G171900 Sobic005G231600--Sobic010G171900 Sobic005G167500 Sobic005G167500 Sobic005G231600--Sobic005G167500 Sobic008G080600 Sobic008G080600 Sobic005G231600--Sobic008G080600 Sobic005G118300 Sobic005G118300 Sobic005G231600--Sobic005G118300 Sobic007G037800 Sobic007G037800 Sobic009G202400--Sobic007G037800 Sobic002G281000 Sobic002G281000 Sobic009G202400--Sobic002G281000 Sobic004G210601 Sobic004G210601 Sobic009G202400--Sobic004G210601 Sobic005G097800 Sobic005G097800 Sobic009G202400--Sobic005G097800 Sobic009G202400--Sobic005G192600 Sobic009G202400--Sobic005G167500 Sobic005G093300 Sobic005G093300 Sobic009G202400--Sobic005G093300 Sobic008G063100 Sobic008G063100 Sobic009G202400--Sobic008G063100 Sobic009G202400--Sobic004G019400 Sobic006G188000 Sobic006G188000 Sobic004G051100--Sobic006G188000 Sobic002G211000 Sobic002G211000 Sobic004G051100--Sobic002G211000 Sobic007G034300 Sobic007G034300 Sobic004G051100--Sobic007G034300 Sobic010G245200 Sobic010G245200 Sobic004G051100--Sobic010G245200 Sobic005G202500 Sobic005G202500 Sobic004G051100--Sobic005G202500 Sobic001G517700 Sobic001G517700 Sobic004G051100--Sobic001G517700 Sobic002G370600 Sobic002G370600 Sobic004G051100--Sobic002G370600 Sobic004G283100 Sobic004G283100 Sobic004G051100--Sobic004G283100 Sobic007G053800 Sobic007G053800 Sobic004G051100--Sobic007G053800 Sobic004G343100--Sobic008G063100 Sobic010G265500 Sobic010G265500 Sobic004G343100--Sobic010G265500 Sobic005G021600 Sobic005G021600 Sobic004G343100--Sobic005G021600 Sobic003G421400 Sobic003G421400 Sobic004G343100--Sobic003G421400 Sobic001G498300 Sobic001G498300 Sobic004G343100--Sobic001G498300 Sobic003G187000 Sobic003G187000 Sobic004G343100--Sobic003G187000 Sobic001G161300 Sobic001G161300 Sobic004G343100--Sobic001G161300 Sobic007G132500 Sobic007G132500 Sobic004G343100--Sobic007G132500 Sobic004G343100--Sobic002G281000 Sobic005G186500 Sobic005G186500 Sobic004G019400--Sobic005G186500 Sobic004G019400--Sobic007G037800 Sobic001G201800 Sobic001G201800 Sobic004G019400--Sobic001G201800 Sobic003G096500 Sobic003G096500 Sobic004G019400--Sobic003G096500 Sobic008G060200 Sobic008G060200 Sobic004G019400--Sobic008G060200 Sobic004G019400--Sobic009G202400 Sobic008G060300 Sobic008G060300 Sobic004G019400--Sobic008G060300 Sobic005G193500 Sobic005G193500 Sobic004G019400--Sobic005G193500 Sobic002G108400 Sobic002G108400 Sobic004G019400--Sobic002G108400 Sobic005G192600--Sobic005G167500 Sobic004G182700 Sobic004G182700 Sobic005G192600--Sobic004G182700 Sobic008G036300 Sobic008G036300 Sobic005G192600--Sobic008G036300 Sobic008G036350 Sobic008G036350 Sobic005G192600--Sobic008G036350 Sobic005G192600--Sobic009G202400 Sobic005G192600--Sobic001G498300 Sobic001G198800 Sobic001G198800 Sobic005G192600--Sobic001G198800 Sobic003G058001 Sobic003G058001 Sobic005G192600--Sobic003G058001 Sobic003G106500 Sobic003G106500 Sobic005G192600--Sobic003G106500 Sobic004G018900 Sobic004G018900 Sobic010G171900--Sobic004G018900 Sobic006G027500 Sobic006G027500 Sobic010G171900--Sobic006G027500 Sobic010G171900--Sobic005G186500 Sobic010G171900--Sobic008G080600 Sobic006G007100 Sobic006G007100 Sobic010G171900--Sobic006G007100 Sobic004G019100 Sobic004G019100 Sobic010G171900--Sobic004G019100 Sobic006G007600 Sobic006G007600 Sobic010G171900--Sobic006G007600 Sobic006G005400 Sobic006G005400 Sobic010G171900--Sobic006G005400 Sobic001G291500 Sobic001G291500 Sobic010G171900--Sobic001G291500 Sobic005G167500--Sobic008G036300 Sobic005G167500--Sobic003G058001 Sobic005G167500--Sobic004G182700 Sobic005G167500--Sobic005G192600 Sobic005G167500--Sobic008G036350 Sobic005G167500--Sobic004G210601 Sobic005G167500--Sobic001G198800 Sobic005G065500 Sobic005G065500 Sobic005G167500--Sobic005G065500 Sobic005G167500--Sobic009G202400 Sobic008G080600--Sobic006G027500 Sobic008G080600--Sobic010G171900 Sobic008G080600--Sobic008G036300 Sobic008G080400 Sobic008G080400 Sobic008G080600--Sobic008G080400 Sobic008G080600--Sobic004G018900 Sobic008G080600--Sobic004G182700 Sobic008G080600--Sobic005G167500 Sobic008G080600--Sobic005G186500 Sobic008G080600--Sobic005G192600 Sobic003G097800 Sobic003G097800 Sobic005G118300--Sobic003G097800 Sobic005G217900 Sobic005G217900 Sobic005G118300--Sobic005G217900 Sobic002G233300 Sobic002G233300 Sobic005G118300--Sobic002G233300 Sobic005G015200 Sobic005G015200 Sobic005G118300--Sobic005G015200 Sobic001G317400 Sobic001G317400 Sobic005G118300--Sobic001G317400 Sobic001G344600 Sobic001G344600 Sobic005G118300--Sobic001G344600 Sobic010G038500 Sobic010G038500 Sobic005G118300--Sobic010G038500 Sobic005G118300--Sobic005G167500 Sobic005G118300--Sobic008G036300
Octagon: transcription factors


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