Gene annotation
Transcriptome id Sobic.006G014900.1
Synonym Sb06g001450, JK218, RPT3, NPH3
Functional annotation BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt A0A1B6PJH9
Pfam PF03000
Panther DB PTHR32370 PTHR32370:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination


Orthologs (automatic annotation)
TAIR AT5G64330 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os02g35970.1 : BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a012287 , Zm00025a053789 , Zm00025a016705 , Zm00025a020770
Brachypodium KQK13013 , KQJ99936 , KQJ99984 , KQJ99983
Barley HORVU6Hr1G015480.2 , HORVU6Hr1G015480.3 , HORVU6Hr1G015480.1 , HORVU6Hr1G015480.7 , HORVU6Hr1G015480.5 , HORVU6Hr1G015480.8 , HORVU5Hr1G098170.6 , HORVU5Hr1G098170.7 , HORVU5Hr1G098170.4 , HORVU5Hr1G098170.5 , HORVU5Hr1G098170.2 , HORVU5Hr1G098170.3 , HORVU5Hr1G098170.1 , HORVU5Hr1G098170.8 , HORVU6Hr1G015480.6 , HORVU6Hr1G015480.4
Wheat TraesCS5A02G403400 , TraesCS5A02G403400 , TraesCS6B02G117400 , TraesCSU02G114000 , TraesCS6A02G085100 , TraesCS5D02G413400 , TraesCS5D02G413400 , TraesCS5B02G408200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G004500 expressed protein -
2 Sobic.002G064200 expressed protein -
3 Sobic.008G054100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
4 Sobic.007G080780 - -
5 Sobic.006G007450 - -
6 Sobic.010G161201 - -
7 Sobic.007G189300 DC1 domain containing protein, expressed -
8 Sobic.008G095100 SAM domain containing protein, putative, expressed -
9 Sobic.003G366100 expressed protein -
10 Sobic.003G325100 NB-ARC domain containing protein, expressed -
11 Sobic.002G202800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY62, expressed -
12 Sobic.004G179500 APO, putative, expressed -
13 Sobic.007G048200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@berberine and berberine like domain containing protein, expressed -
14 Sobic.006G093000 methyltransferase domain containing protein, expressed -
15 Sobic.010G006300 homeobox domain containing protein, expressed -
16 Sobic.008G067500 protein kinase, putative, expressed -
17 Sobic.003G242800 down-regulated TF in developmental senescence(PubMedID : 27586543)@WRKY15, expressed -
18 Sobic.001G363200 expressed protein -
19 Sobic.003G401500 expressed protein -
20 Sobic.006G187401 - -


Gene co-expression network
sample Sobic006G014900 Sobic006G014900 Sobic010G004500 Sobic010G004500 Sobic006G014900--Sobic010G004500 Sobic002G064200 Sobic002G064200 Sobic006G014900--Sobic002G064200 Sobic008G054100 Sobic008G054100 Sobic006G014900--Sobic008G054100 Sobic007G080780 Sobic007G080780 Sobic006G014900--Sobic007G080780 Sobic006G007450 Sobic006G007450 Sobic006G014900--Sobic006G007450 Sobic010G161201 Sobic010G161201 Sobic006G014900--Sobic010G161201 Sobic007G189300 Sobic007G189300 Sobic006G014900--Sobic007G189300 Sobic008G095100 Sobic008G095100 Sobic006G014900--Sobic008G095100 Sobic003G366100 Sobic003G366100 Sobic006G014900--Sobic003G366100 Sobic003G325100 Sobic003G325100 Sobic010G004500--Sobic003G325100 Sobic010G004500--Sobic008G095100 Sobic001G059300 Sobic001G059300 Sobic010G004500--Sobic001G059300 Sobic002G070700 Sobic002G070700 Sobic010G004500--Sobic002G070700 Sobic009G092200 Sobic009G092200 Sobic010G004500--Sobic009G092200 Sobic007G072166 Sobic007G072166 Sobic010G004500--Sobic007G072166 Sobic002G202800 Sobic002G202800 Sobic010G004500--Sobic002G202800 Sobic003G080500 Sobic003G080500 Sobic010G004500--Sobic003G080500 Sobic004G157200 Sobic004G157200 Sobic010G004500--Sobic004G157200 Sobic002G064200--Sobic002G202800 Sobic009G115500 Sobic009G115500 Sobic002G064200--Sobic009G115500 Sobic010G172300 Sobic010G172300 Sobic002G064200--Sobic010G172300 Sobic002G202700 Sobic002G202700 Sobic002G064200--Sobic002G202700 Sobic010G225500 Sobic010G225500 Sobic002G064200--Sobic010G225500 Sobic002G130500 Sobic002G130500 Sobic002G064200--Sobic002G130500 Sobic002G173900 Sobic002G173900 Sobic002G064200--Sobic002G173900 Sobic002G064200--Sobic006G007450 Sobic001G363200 Sobic001G363200 Sobic002G064200--Sobic001G363200 Sobic008G054100--Sobic003G366100 Sobic008G054100--Sobic002G064200 Sobic003G256000 Sobic003G256000 Sobic008G054100--Sobic003G256000 Sobic008G054100--Sobic001G363200 Sobic005G193500 Sobic005G193500 Sobic008G054100--Sobic005G193500 Sobic008G060300 Sobic008G060300 Sobic008G054100--Sobic008G060300 Sobic008G054100--Sobic002G173900 Sobic008G054100--Sobic010G172300 Sobic004G099700 Sobic004G099700 Sobic008G054100--Sobic004G099700 Sobic001G252401 Sobic001G252401 Sobic007G080780--Sobic001G252401 Sobic001G071200 Sobic001G071200 Sobic007G080780--Sobic001G071200 Sobic003G284800 Sobic003G284800 Sobic007G080780--Sobic003G284800 Sobic003G255900 Sobic003G255900 Sobic007G080780--Sobic003G255900 Sobic007G080780--Sobic004G099700 Sobic007G080780--Sobic006G014900 Sobic010G006300 Sobic010G006300 Sobic007G080780--Sobic010G006300 Sobic006G123500 Sobic006G123500 Sobic007G080780--Sobic006G123500 Sobic006G093000 Sobic006G093000 Sobic007G080780--Sobic006G093000 Sobic006G007650 Sobic006G007650 Sobic006G007450--Sobic006G007650 Sobic006G007450--Sobic002G064200 Sobic006G007450--Sobic002G202700 Sobic006G007450--Sobic010G225500 Sobic009G115300 Sobic009G115300 Sobic006G007450--Sobic009G115300 Sobic002G108400 Sobic002G108400 Sobic006G007450--Sobic002G108400 Sobic008G028600 Sobic008G028600 Sobic006G007450--Sobic008G028600 Sobic006G007450--Sobic008G095100 Sobic002G334500 Sobic002G334500 Sobic006G007450--Sobic002G334500 Sobic010G161201--Sobic008G054100 Sobic007G048200 Sobic007G048200 Sobic010G161201--Sobic007G048200 Sobic009G202400 Sobic009G202400 Sobic010G161201--Sobic009G202400 Sobic005G192600 Sobic005G192600 Sobic010G161201--Sobic005G192600 Sobic010G161201--Sobic006G014900 Sobic010G161201--Sobic010G172300 Sobic001G198700 Sobic001G198700 Sobic010G161201--Sobic001G198700 Sobic010G225600 Sobic010G225600 Sobic010G161201--Sobic010G225600 Sobic005G231600 Sobic005G231600 Sobic010G161201--Sobic005G231600 Sobic007G189300--Sobic002G070700 Sobic007G189300--Sobic003G080500 Sobic003G081500 Sobic003G081500 Sobic007G189300--Sobic003G081500 Sobic002G288800 Sobic002G288800 Sobic007G189300--Sobic002G288800 Sobic006G030250 Sobic006G030250 Sobic007G189300--Sobic006G030250 Sobic010G127500 Sobic010G127500 Sobic007G189300--Sobic010G127500 Sobic005G008101 Sobic005G008101 Sobic007G189300--Sobic005G008101 Sobic005G134301 Sobic005G134301 Sobic007G189300--Sobic005G134301 Sobic008G139100 Sobic008G139100 Sobic007G189300--Sobic008G139100 Sobic008G095100--Sobic003G325100 Sobic008G095100--Sobic010G004500 Sobic008G095100--Sobic006G007450 Sobic009G173800 Sobic009G173800 Sobic008G095100--Sobic009G173800 Sobic009G082800 Sobic009G082800 Sobic008G095100--Sobic009G082800 Sobic008G095100--Sobic002G202800 Sobic008G095100--Sobic002G064200 Sobic002G174801 Sobic002G174801 Sobic008G095100--Sobic002G174801 Sobic003G401500 Sobic003G401500 Sobic008G095100--Sobic003G401500 Sobic003G366100--Sobic008G060300 Sobic003G310200 Sobic003G310200 Sobic003G366100--Sobic003G310200 Sobic007G089300 Sobic007G089300 Sobic003G366100--Sobic007G089300 Sobic003G366100--Sobic002G173900 Sobic005G193600 Sobic005G193600 Sobic003G366100--Sobic005G193600 Sobic003G366100--Sobic002G202700 Sobic001G012000 Sobic001G012000 Sobic003G366100--Sobic001G012000 Sobic003G378301 Sobic003G378301 Sobic003G366100--Sobic003G378301 Sobic010G130800 Sobic010G130800 Sobic003G366100--Sobic010G130800
Octagon: transcription factors


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