Gene annotation
Transcriptome id Sobic.004G179500.1
Synonym APO3, Sb04g022910
Functional annotation APO, putative, expressed
UniProt C5XUW1
Pfam PF05634
Panther DB PTHR10388 PTHR10388:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G61930 : Arabidopsis thaliana protein of unknown function (DUF794)
RAP-DB (Rice) LOC_Os07g40920.1 : APO, putative, expressed
MaizeGDB (Corn) Zm00025a020714
Brachypodium -
Barley HORVU6Hr1G064120.20 , HORVU6Hr1G064120.21 , HORVU6Hr1G064120.22 , HORVU6Hr1G064120.23 , HORVU6Hr1G064120.24 , HORVU6Hr1G064120.25 , HORVU6Hr1G064120.26 , HORVU6Hr1G064120.19 , HORVU6Hr1G064120.18 , HORVU6Hr1G064120.15 , HORVU6Hr1G064120.14 , HORVU6Hr1G064120.17 , HORVU6Hr1G064120.16 , HORVU6Hr1G064120.11 , HORVU6Hr1G064120.10 , HORVU6Hr1G064120.13 , HORVU6Hr1G064120.12 , HORVU6Hr1G064120.9 , HORVU6Hr1G064120.8 , HORVU6Hr1G064120.1 , HORVU6Hr1G064120.3 , HORVU6Hr1G064120.2 , HORVU6Hr1G064120.5 , HORVU6Hr1G064120.4 , HORVU6Hr1G064120.7 , HORVU6Hr1G064120.6
Wheat TraesCS6D02G227700 , TraesCS6A02G245300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G448800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lecithin cholesterol acyltransferase, putative, expressed -
2 Sobic.006G007450 - -
3 Sobic.003G255100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.010G182800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase 1, putative, expressed -
5 Sobic.001G198700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
6 Sobic.003G401500 expressed protein -
7 Sobic.001G452700 serine/threonine-protein kinase receptor precursor, putative, expressed -
8 Sobic.002G064200 expressed protein -
9 Sobic.008G095100 SAM domain containing protein, putative, expressed -
10 Sobic.005G089000 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.004G007500 cytochrome P450, putative, expressed K10528: hydroperoxide lyase
12 Sobic.010G225500 - -
13 Sobic.001G449800 OsWAK25 - OsWAK receptor-like protein kinase, expressed -
14 Sobic.009G075100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@lachrymatory factor synthase, putative, expressed -
15 Sobic.001G291500 - -
16 Sobic.002G202700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY76, expressed -
17 Sobic.010G079700 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
18 Sobic.006G007650 - -
19 Sobic.001G019500 expressed protein -
20 Sobic.008G073400 B-box (BBX) protein(PubMedID : 30626335)@down-regulated TF in developmental senescence(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic004G179500 Sobic004G179500 Sobic001G448800 Sobic001G448800 Sobic004G179500--Sobic001G448800 Sobic006G007450 Sobic006G007450 Sobic004G179500--Sobic006G007450 Sobic003G255100 Sobic003G255100 Sobic004G179500--Sobic003G255100 Sobic010G182800 Sobic010G182800 Sobic004G179500--Sobic010G182800 Sobic001G198700 Sobic001G198700 Sobic004G179500--Sobic001G198700 Sobic003G401500 Sobic003G401500 Sobic004G179500--Sobic003G401500 Sobic001G452700 Sobic001G452700 Sobic004G179500--Sobic001G452700 Sobic002G064200 Sobic002G064200 Sobic004G179500--Sobic002G064200 Sobic008G095100 Sobic008G095100 Sobic004G179500--Sobic008G095100 Sobic004G007500 Sobic004G007500 Sobic001G448800--Sobic004G007500 Sobic009G075100 Sobic009G075100 Sobic001G448800--Sobic009G075100 Sobic001G448800--Sobic004G179500 Sobic002G174801 Sobic002G174801 Sobic001G448800--Sobic002G174801 Sobic004G078600 Sobic004G078600 Sobic001G448800--Sobic004G078600 Sobic003G214000 Sobic003G214000 Sobic001G448800--Sobic003G214000 Sobic009G000900 Sobic009G000900 Sobic001G448800--Sobic009G000900 Sobic009G233900 Sobic009G233900 Sobic001G448800--Sobic009G233900 Sobic001G320700 Sobic001G320700 Sobic001G448800--Sobic001G320700 Sobic006G007650 Sobic006G007650 Sobic006G007450--Sobic006G007650 Sobic006G007450--Sobic002G064200 Sobic002G202700 Sobic002G202700 Sobic006G007450--Sobic002G202700 Sobic010G225500 Sobic010G225500 Sobic006G007450--Sobic010G225500 Sobic009G115300 Sobic009G115300 Sobic006G007450--Sobic009G115300 Sobic002G108400 Sobic002G108400 Sobic006G007450--Sobic002G108400 Sobic008G028600 Sobic008G028600 Sobic006G007450--Sobic008G028600 Sobic006G007450--Sobic008G095100 Sobic002G334500 Sobic002G334500 Sobic006G007450--Sobic002G334500 Sobic010G079700 Sobic010G079700 Sobic003G255100--Sobic010G079700 Sobic001G093600 Sobic001G093600 Sobic003G255100--Sobic001G093600 Sobic002G155900 Sobic002G155900 Sobic003G255100--Sobic002G155900 Sobic001G005500 Sobic001G005500 Sobic003G255100--Sobic001G005500 Sobic001G179100 Sobic001G179100 Sobic003G255100--Sobic001G179100 Sobic001G030500 Sobic001G030500 Sobic003G255100--Sobic001G030500 Sobic006G269400 Sobic006G269400 Sobic003G255100--Sobic006G269400 Sobic002G287000 Sobic002G287000 Sobic003G255100--Sobic002G287000 Sobic007G191900 Sobic007G191900 Sobic003G255100--Sobic007G191900 Sobic010G182800--Sobic003G255100 Sobic010G182800--Sobic010G079700 Sobic010G182800--Sobic001G030500 Sobic010G182800--Sobic007G191900 Sobic001G321600 Sobic001G321600 Sobic010G182800--Sobic001G321600 Sobic010G182800--Sobic001G005500 Sobic002G366100 Sobic002G366100 Sobic010G182800--Sobic002G366100 Sobic002G195700 Sobic002G195700 Sobic010G182800--Sobic002G195700 Sobic010G182800--Sobic001G179100 Sobic003G106500 Sobic003G106500 Sobic001G198700--Sobic003G106500 Sobic001G019300 Sobic001G019300 Sobic001G198700--Sobic001G019300 Sobic002G265400 Sobic002G265400 Sobic001G198700--Sobic002G265400 Sobic001G198700--Sobic002G195700 Sobic008G063100 Sobic008G063100 Sobic001G198700--Sobic008G063100 Sobic004G063200 Sobic004G063200 Sobic001G198700--Sobic004G063200 Sobic005G093300 Sobic005G093300 Sobic001G198700--Sobic005G093300 Sobic002G371900 Sobic002G371900 Sobic001G198700--Sobic002G371900 Sobic001G198700--Sobic004G078600 Sobic001G330925 Sobic001G330925 Sobic003G401500--Sobic001G330925 Sobic009G173800 Sobic009G173800 Sobic003G401500--Sobic009G173800 Sobic003G401500--Sobic002G064200 Sobic003G401500--Sobic001G448800 Sobic003G401500--Sobic009G233900 Sobic003G401500--Sobic004G179500 Sobic004G138400 Sobic004G138400 Sobic003G401500--Sobic004G138400 Sobic009G115500 Sobic009G115500 Sobic003G401500--Sobic009G115500 Sobic009G082800 Sobic009G082800 Sobic003G401500--Sobic009G082800 Sobic001G452700--Sobic001G093600 Sobic001G452700--Sobic003G255100 Sobic010G246600 Sobic010G246600 Sobic001G452700--Sobic010G246600 Sobic005G089000 Sobic005G089000 Sobic001G452700--Sobic005G089000 Sobic001G452700--Sobic001G005500 Sobic001G452700--Sobic007G191900 Sobic004G096100 Sobic004G096100 Sobic001G452700--Sobic004G096100 Sobic007G179750 Sobic007G179750 Sobic001G452700--Sobic007G179750 Sobic008G073400 Sobic008G073400 Sobic001G452700--Sobic008G073400 Sobic002G202800 Sobic002G202800 Sobic002G064200--Sobic002G202800 Sobic002G064200--Sobic009G115500 Sobic010G172300 Sobic010G172300 Sobic002G064200--Sobic010G172300 Sobic002G064200--Sobic002G202700 Sobic002G064200--Sobic010G225500 Sobic002G130500 Sobic002G130500 Sobic002G064200--Sobic002G130500 Sobic002G173900 Sobic002G173900 Sobic002G064200--Sobic002G173900 Sobic002G064200--Sobic006G007450 Sobic001G363200 Sobic001G363200 Sobic002G064200--Sobic001G363200 Sobic003G325100 Sobic003G325100 Sobic008G095100--Sobic003G325100 Sobic010G004500 Sobic010G004500 Sobic008G095100--Sobic010G004500 Sobic008G095100--Sobic006G007450 Sobic008G095100--Sobic009G173800 Sobic008G095100--Sobic009G082800 Sobic008G095100--Sobic002G202800 Sobic008G095100--Sobic002G064200 Sobic008G095100--Sobic002G174801 Sobic008G095100--Sobic003G401500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.