Gene annotation
Transcriptome id Sobic.006G068000.1
Synonym Sb06g015460
Functional annotation RCLEA6 - Root cap and Late embryogenesis related family protein precursor, expressed
UniProt C5YFT6
Pfam PF06830
Panther DB PTHR31656 PTHR31656:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19430 : late embryogenesis abundant protein-related / LEA protein-related
RAP-DB (Rice) LOC_Os04g33520.1 : RCLEA6 - Root cap and Late embryogenesis related family protein precursor, expressed
MaizeGDB (Corn) Zm00025a011534 , Zm00025a052221 , Zm00025a033481 , Zm00025a040983 , Zm00025a002979 , Zm00025a025851
Brachypodium KQJ82493
Barley HORVU0Hr1G039790.1 , HORVU1Hr1G002950.3 , HORVU1Hr1G002950.2 , HORVU1Hr1G002950.1
Wheat TraesCS2B02G310100 , TraesCS1D02G022800 , TraesCS2D02G291400 , TraesCS2A02G293800 , TraesCS2D02G291700 , TraesCS2A02G294100 , TraesCS2B02G310400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G095100 glycosyltransferase protein, putative, expressed -
2 Sobic.004G029400 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
3 Sobic.001G539200 expressed protein -
4 Sobic.001G187300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed -
5 Sobic.001G014700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
6 Sobic.010G147200 aluminum-activated malate transporter, putative, expressed -
7 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.010G031700 thaumatin, putative, expressed -
9 Sobic.010G087900 similar to Aquaporin PIP1-6(PubMedID : 29862293)@-(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
10 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
11 Sobic.006G133400 - -
12 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
13 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
15 Sobic.001G507100 dirigent, putative, expressed -
16 Sobic.003G317900 lysM domain containing protein, putative -
17 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
18 Sobic.010G130500 SAM dependent carboxyl methyltransferase, putative, expressed -
19 Sobic.004G164300 - -
20 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -


Gene co-expression network
sample Sobic006G068000 Sobic006G068000 Sobic003G095100 Sobic003G095100 Sobic006G068000--Sobic003G095100 Sobic004G029400 Sobic004G029400 Sobic006G068000--Sobic004G029400 Sobic001G539200 Sobic001G539200 Sobic006G068000--Sobic001G539200 Sobic001G187300 Sobic001G187300 Sobic006G068000--Sobic001G187300 Sobic001G014700 Sobic001G014700 Sobic006G068000--Sobic001G014700 Sobic010G147200 Sobic010G147200 Sobic006G068000--Sobic010G147200 Sobic003G053200 Sobic003G053200 Sobic006G068000--Sobic003G053200 Sobic010G031700 Sobic010G031700 Sobic006G068000--Sobic010G031700 Sobic010G087900 Sobic010G087900 Sobic006G068000--Sobic010G087900 Sobic006G205700 Sobic006G205700 Sobic003G095100--Sobic006G205700 Sobic003G441800 Sobic003G441800 Sobic003G095100--Sobic003G441800 Sobic008G020000 Sobic008G020000 Sobic003G095100--Sobic008G020000 Sobic003G167300 Sobic003G167300 Sobic003G095100--Sobic003G167300 Sobic003G282300 Sobic003G282300 Sobic003G095100--Sobic003G282300 Sobic003G441601 Sobic003G441601 Sobic003G095100--Sobic003G441601 Sobic007G090600 Sobic007G090600 Sobic003G095100--Sobic007G090600 Sobic004G106100 Sobic004G106100 Sobic003G095100--Sobic004G106100 Sobic005G046400 Sobic005G046400 Sobic003G095100--Sobic005G046400 Sobic004G029400--Sobic003G441800 Sobic004G029400--Sobic003G053200 Sobic004G029400--Sobic010G031700 Sobic004G121600 Sobic004G121600 Sobic004G029400--Sobic004G121600 Sobic007G037600 Sobic007G037600 Sobic004G029400--Sobic007G037600 Sobic004G029400--Sobic001G539200 Sobic009G181600 Sobic009G181600 Sobic004G029400--Sobic009G181600 Sobic004G029400--Sobic003G282300 Sobic005G119900 Sobic005G119900 Sobic004G029400--Sobic005G119900 Sobic002G118801 Sobic002G118801 Sobic001G539200--Sobic002G118801 Sobic001G539200--Sobic005G119900 Sobic001G539200--Sobic010G087900 Sobic005G097400 Sobic005G097400 Sobic001G539200--Sobic005G097400 Sobic001G539200--Sobic003G053200 Sobic001G539200--Sobic004G029400 Sobic001G539200--Sobic003G441800 Sobic008G109400 Sobic008G109400 Sobic001G539200--Sobic008G109400 Sobic003G441700 Sobic003G441700 Sobic001G539200--Sobic003G441700 Sobic005G222500 Sobic005G222500 Sobic001G187300--Sobic005G222500 Sobic001G187300--Sobic001G014700 Sobic001G187300--Sobic010G147200 Sobic001G187300--Sobic005G097400 Sobic001G507100 Sobic001G507100 Sobic001G187300--Sobic001G507100 Sobic001G502000 Sobic001G502000 Sobic001G187300--Sobic001G502000 Sobic001G261509 Sobic001G261509 Sobic001G187300--Sobic001G261509 Sobic003G280000 Sobic003G280000 Sobic001G187300--Sobic003G280000 Sobic008G109300 Sobic008G109300 Sobic001G187300--Sobic008G109300 Sobic001G014700--Sobic003G280000 Sobic001G301000 Sobic001G301000 Sobic001G014700--Sobic001G301000 Sobic002G366200 Sobic002G366200 Sobic001G014700--Sobic002G366200 Sobic001G014700--Sobic010G147200 Sobic001G014700--Sobic005G119900 Sobic003G353200 Sobic003G353200 Sobic001G014700--Sobic003G353200 Sobic005G202300 Sobic005G202300 Sobic001G014700--Sobic005G202300 Sobic008G164450 Sobic008G164450 Sobic001G014700--Sobic008G164450 Sobic008G010500 Sobic008G010500 Sobic001G014700--Sobic008G010500 Sobic001G379400 Sobic001G379400 Sobic010G147200--Sobic001G379400 Sobic010G147200--Sobic001G014700 Sobic006G003100 Sobic006G003100 Sobic010G147200--Sobic006G003100 Sobic006G089000 Sobic006G089000 Sobic010G147200--Sobic006G089000 Sobic006G277700 Sobic006G277700 Sobic010G147200--Sobic006G277700 Sobic010G147200--Sobic001G502000 Sobic006G174300 Sobic006G174300 Sobic010G147200--Sobic006G174300 Sobic001G234900 Sobic001G234900 Sobic010G147200--Sobic001G234900 Sobic010G147200--Sobic010G031700 Sobic003G053200--Sobic003G441800 Sobic003G053200--Sobic003G441700 Sobic003G053200--Sobic001G301000 Sobic003G053200--Sobic004G121600 Sobic003G053200--Sobic010G031700 Sobic003G053200--Sobic005G119900 Sobic003G053200--Sobic004G029400 Sobic001G231800 Sobic001G231800 Sobic003G053200--Sobic001G231800 Sobic003G053200--Sobic007G037600 Sobic010G031700--Sobic003G053200 Sobic010G031700--Sobic007G037600 Sobic010G031700--Sobic003G441800 Sobic010G031700--Sobic004G106100 Sobic010G031700--Sobic004G029400 Sobic010G031700--Sobic006G003100 Sobic010G031700--Sobic006G205700 Sobic002G233200 Sobic002G233200 Sobic010G031700--Sobic002G233200 Sobic010G031700--Sobic003G353200 Sobic010G087900--Sobic001G539200 Sobic003G206400 Sobic003G206400 Sobic010G087900--Sobic003G206400 Sobic010G087900--Sobic008G020000 Sobic010G087900--Sobic003G053200 Sobic002G063600 Sobic002G063600 Sobic010G087900--Sobic002G063600 Sobic003G317900 Sobic003G317900 Sobic010G087900--Sobic003G317900 Sobic010G087900--Sobic003G095100 Sobic010G087900--Sobic004G029400 Sobic010G087900--Sobic010G031700
Octagon: transcription factors


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