Gene annotation
Transcriptome id Sobic.006G082100.1
Synonym ATM3, TRX-M3, GAT1, Sb06g016870, ATHM3
Functional annotation dehydration-responsive element-binding protein, putative, expressed
UniProt C5Y8M6
Pfam PF00085
Panther DB PTHR10438 PTHR10438:SF233
NCBI CDD KOG0910; Thioredoxin-like protein
KEGG Orthology K03671; thioredoxin 1
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0006662glycerol ether metabolic process


Orthologs (automatic annotation)
TAIR AT2G15570 : Thioredoxin superfamily protein
RAP-DB (Rice) LOC_Os04g36640.1 : dehydration-responsive element-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a011381
Brachypodium PNT61092 , KQJ82648
Barley HORVU2Hr1G075240.9 , HORVU2Hr1G075240.8 , HORVU2Hr1G075240.6 , HORVU2Hr1G075240.7 , HORVU2Hr1G075240.4 , HORVU2Hr1G075240.5 , HORVU2Hr1G075240.2 , HORVU2Hr1G075240.3 , HORVU2Hr1G075240.1 , HORVU2Hr1G075240.15 , HORVU2Hr1G075240.14 , HORVU2Hr1G075240.16 , HORVU2Hr1G075240.10 , HORVU2Hr1G075240.11 , HORVU2Hr1G075240.12 , HORVU2Hr1G075240.13
Wheat TraesCS2A02G303200 , TraesCS2D02G301800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G082100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G262500 OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed -
2 Sobic.001G507700 - -
3 Sobic.001G082700 TKL_IRAK_CrRLK1L-1.1 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
4 Sobic.010G105900 - -
5 Sobic.002G387000 expressed protein -
6 Sobic.001G183550 - -
7 Sobic.007G189900 membrane associated DUF588 domain containing protein, putative, expressed -
8 Sobic.002G382400 - -
9 Sobic.009G055000 - -
10 Sobic.009G112500 lipase, putative, expressed -
11 Sobic.002G377400 cysteine-rich receptor-like protein kinase 16 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
12 Sobic.007G165100 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
13 Sobic.003G433000 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.009G181900 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
15 Sobic.002G197400 expressed protein -
16 Sobic.001G439050 - -
17 Sobic.003G056900 expressed protein -
18 Sobic.008G016800 zinc finger DHHC domain-containing protein, putative, expressed -
19 Sobic.001G109400 glycosyl hydrolases family 17, putative, expressed -
20 Sobic.001G424066 - -


Gene co-expression network
sample Sobic006G082100 Sobic006G082100 Sobic003G262500 Sobic003G262500 Sobic006G082100--Sobic003G262500 Sobic001G507700 Sobic001G507700 Sobic006G082100--Sobic001G507700 Sobic001G082700 Sobic001G082700 Sobic006G082100--Sobic001G082700 Sobic010G105900 Sobic010G105900 Sobic006G082100--Sobic010G105900 Sobic002G387000 Sobic002G387000 Sobic006G082100--Sobic002G387000 Sobic001G183550 Sobic001G183550 Sobic006G082100--Sobic001G183550 Sobic007G189900 Sobic007G189900 Sobic006G082100--Sobic007G189900 Sobic002G382400 Sobic002G382400 Sobic006G082100--Sobic002G382400 Sobic009G055000 Sobic009G055000 Sobic006G082100--Sobic009G055000 Sobic003G262500--Sobic006G082100 Sobic009G181900 Sobic009G181900 Sobic003G262500--Sobic009G181900 Sobic009G112500 Sobic009G112500 Sobic003G262500--Sobic009G112500 Sobic002G377400 Sobic002G377400 Sobic003G262500--Sobic002G377400 Sobic010G249600 Sobic010G249600 Sobic003G262500--Sobic010G249600 Sobic003G262500--Sobic010G105900 Sobic006G249600 Sobic006G249600 Sobic003G262500--Sobic006G249600 Sobic003G262500--Sobic002G387000 Sobic002G398600 Sobic002G398600 Sobic003G262500--Sobic002G398600 Sobic004G306700 Sobic004G306700 Sobic001G507700--Sobic004G306700 Sobic001G507700--Sobic006G082100 Sobic001G507700--Sobic002G387000 Sobic001G212800 Sobic001G212800 Sobic001G507700--Sobic001G212800 Sobic009G064832 Sobic009G064832 Sobic001G507700--Sobic009G064832 Sobic009G211600 Sobic009G211600 Sobic001G507700--Sobic009G211600 Sobic001G507700--Sobic007G189900 Sobic001G507700--Sobic010G105900 Sobic001G096200 Sobic001G096200 Sobic001G507700--Sobic001G096200 Sobic003G301950 Sobic003G301950 Sobic001G082700--Sobic003G301950 Sobic007G165100 Sobic007G165100 Sobic001G082700--Sobic007G165100 Sobic001G082700--Sobic006G082100 Sobic008G075500 Sobic008G075500 Sobic001G082700--Sobic008G075500 Sobic001G082700--Sobic002G387000 Sobic010G242000 Sobic010G242000 Sobic001G082700--Sobic010G242000 Sobic006G280250 Sobic006G280250 Sobic001G082700--Sobic006G280250 Sobic008G159800 Sobic008G159800 Sobic001G082700--Sobic008G159800 Sobic004G091300 Sobic004G091300 Sobic001G082700--Sobic004G091300 Sobic008G016800 Sobic008G016800 Sobic010G105900--Sobic008G016800 Sobic001G212900 Sobic001G212900 Sobic010G105900--Sobic001G212900 Sobic008G160100 Sobic008G160100 Sobic010G105900--Sobic008G160100 Sobic001G109400 Sobic001G109400 Sobic010G105900--Sobic001G109400 Sobic002G197400 Sobic002G197400 Sobic010G105900--Sobic002G197400 Sobic010G105900--Sobic006G249600 Sobic010G105900--Sobic007G189900 Sobic002G110600 Sobic002G110600 Sobic010G105900--Sobic002G110600 Sobic010G105900--Sobic003G262500 Sobic002G387000--Sobic007G189900 Sobic001G312801 Sobic001G312801 Sobic002G387000--Sobic001G312801 Sobic010G118401 Sobic010G118401 Sobic002G387000--Sobic010G118401 Sobic002G387000--Sobic009G112500 Sobic002G387000--Sobic003G301950 Sobic001G490600 Sobic001G490600 Sobic002G387000--Sobic001G490600 Sobic002G387000--Sobic009G181900 Sobic002G387000--Sobic001G507700 Sobic009G147600 Sobic009G147600 Sobic002G387000--Sobic009G147600 Sobic001G183550--Sobic008G075500 Sobic010G229025 Sobic010G229025 Sobic001G183550--Sobic010G229025 Sobic009G199401 Sobic009G199401 Sobic001G183550--Sobic009G199401 Sobic003G162600 Sobic003G162600 Sobic001G183550--Sobic003G162600 Sobic001G489400 Sobic001G489400 Sobic001G183550--Sobic001G489400 Sobic008G169500 Sobic008G169500 Sobic001G183550--Sobic008G169500 Sobic002G207601 Sobic002G207601 Sobic001G183550--Sobic002G207601 Sobic001G183550--Sobic006G082100 Sobic002G421100 Sobic002G421100 Sobic001G183550--Sobic002G421100 Sobic007G189900--Sobic002G387000 Sobic007G189900--Sobic001G312801 Sobic007G189900--Sobic010G105900 Sobic007G189900--Sobic009G181900 Sobic004G310400 Sobic004G310400 Sobic007G189900--Sobic004G310400 Sobic004G257900 Sobic004G257900 Sobic007G189900--Sobic004G257900 Sobic010G043700 Sobic010G043700 Sobic007G189900--Sobic010G043700 Sobic007G189900--Sobic003G301950 Sobic007G189900--Sobic003G262500 Sobic003G201800 Sobic003G201800 Sobic002G382400--Sobic003G201800 Sobic001G439050 Sobic001G439050 Sobic002G382400--Sobic001G439050 Sobic010G120350 Sobic010G120350 Sobic002G382400--Sobic010G120350 Sobic004G319500 Sobic004G319500 Sobic002G382400--Sobic004G319500 Sobic003G236501 Sobic003G236501 Sobic002G382400--Sobic003G236501 Sobic007G107900 Sobic007G107900 Sobic002G382400--Sobic007G107900 Sobic003G056900 Sobic003G056900 Sobic002G382400--Sobic003G056900 Sobic002G382400--Sobic006G082100 Sobic006G001600 Sobic006G001600 Sobic002G382400--Sobic006G001600 Sobic002G296800 Sobic002G296800 Sobic009G055000--Sobic002G296800 Sobic009G055000--Sobic006G082100 Sobic003G364550 Sobic003G364550 Sobic009G055000--Sobic003G364550 Sobic009G055000--Sobic003G262500 Sobic009G055000--Sobic002G382400 Sobic009G055000--Sobic002G377400 Sobic005G165032 Sobic005G165032 Sobic009G055000--Sobic005G165032 Sobic002G181500 Sobic002G181500 Sobic009G055000--Sobic002G181500 Sobic002G187900 Sobic002G187900 Sobic009G055000--Sobic002G187900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.