Gene annotation
Transcriptome id Sobic.006G149600.1
Synonym ARF16, auxin response factor, Sb06g022810, SbARF13
Functional annotation "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt A0A1B6PM25
Pfam PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0009725response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G30080 : auxin response factor 16
RAP-DB (Rice) LOC_Os02g41800.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a017609 , Zm00025a032039 , Zm00025a056523 , Zm00025a041848
Brachypodium KQJ85484 , KQK17233 , KQJ85485 , KQJ83629 , PNT69103
Barley HORVU2Hr1G089670.1 , HORVU2Hr1G089670.2 , HORVU2Hr1G089670.3 , HORVU2Hr1G089670.4 , HORVU2Hr1G089670.5 , HORVU2Hr1G089660.8 , HORVU6Hr1G058890.8 , HORVU6Hr1G058890.6 , HORVU6Hr1G058890.7 , HORVU6Hr1G058890.5 , HORVU6Hr1G058890.2 , HORVU6Hr1G058890.1 , HORVU7Hr1G101270.8 , HORVU7Hr1G101270.2 , HORVU7Hr1G101270.3 , HORVU7Hr1G101270.1 , HORVU7Hr1G101270.6 , HORVU7Hr1G101270.7 , HORVU7Hr1G101270.4 , HORVU7Hr1G101270.5 , HORVU1Hr1G041770.1 , HORVU1Hr1G041770.6 , HORVU1Hr1G041770.4 , HORVU1Hr1G041770.5 , HORVU4Hr1G078490.1 , HORVU6Hr1G058890.10
Wheat TraesCS1A02G156600 , TraesCS1B02G173700 , TraesCS7D02G436800 , TraesCS6B02G258800 , TraesCS1D02G155100 , TraesCS2D02G376600 , TraesCS6A02G222300 , TraesCS2A02G380300 , TraesCS2B02G397300 , TraesCS7A02G446900 , TraesCS7B02G346700 , TraesCS7B02G346700 , TraesCS6D02G212700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G149600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G000200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
2 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
3 Sobic.001G273500 leucine-rich repeat receptor-like protein kinase 1, putative, expressed -
4 Sobic.004G071200 limonoid UDP-glucosyltransferase, putative, expressed -
5 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
6 Sobic.001G015500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
7 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
8 Sobic.001G298500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
10 Sobic.004G124200 3-hydroxyacyl-CoA dehydrogenase, putative, expressed K10527: enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase
11 Sobic.003G363100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialyltransferase family domain containing protein, expressed -
12 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
13 Sobic.001G350700 Positive regulator of ABA(PubMedID : 30367619)@CAMK_CAMK_like.19 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
14 Sobic.001G474700 expressed protein -
15 Sobic.006G199000 pathogenesis-related Bet v I family protein, putative, expressed -
16 Sobic.002G266000 ankyrin repeat-containing protein, putative, expressed -
17 Sobic.008G190900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
18 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
19 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
20 Sobic.008G189200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -


Gene co-expression network
sample Sobic006G149600 Sobic006G149600 Sobic009G000200 Sobic009G000200 Sobic006G149600--Sobic009G000200 Sobic004G162400 Sobic004G162400 Sobic006G149600--Sobic004G162400 Sobic001G273500 Sobic001G273500 Sobic006G149600--Sobic001G273500 Sobic004G071200 Sobic004G071200 Sobic006G149600--Sobic004G071200 Sobic005G231900 Sobic005G231900 Sobic006G149600--Sobic005G231900 Sobic001G015500 Sobic001G015500 Sobic006G149600--Sobic001G015500 Sobic009G079300 Sobic009G079300 Sobic006G149600--Sobic009G079300 Sobic001G298500 Sobic001G298500 Sobic006G149600--Sobic001G298500 Sobic005G178100 Sobic005G178100 Sobic006G149600--Sobic005G178100 Sobic009G000200--Sobic009G079300 Sobic003G316300 Sobic003G316300 Sobic009G000200--Sobic003G316300 Sobic001G386400 Sobic001G386400 Sobic009G000200--Sobic001G386400 Sobic009G000200--Sobic001G298500 Sobic006G002600 Sobic006G002600 Sobic009G000200--Sobic006G002600 Sobic008G189200 Sobic008G189200 Sobic009G000200--Sobic008G189200 Sobic004G125900 Sobic004G125900 Sobic009G000200--Sobic004G125900 Sobic001G180900 Sobic001G180900 Sobic009G000200--Sobic001G180900 Sobic009G000200--Sobic006G149600 Sobic005G216000 Sobic005G216000 Sobic004G162400--Sobic005G216000 Sobic002G304000 Sobic002G304000 Sobic004G162400--Sobic002G304000 Sobic004G162400--Sobic005G231900 Sobic004G101900 Sobic004G101900 Sobic004G162400--Sobic004G101900 Sobic009G161000 Sobic009G161000 Sobic004G162400--Sobic009G161000 Sobic004G162400--Sobic005G178100 Sobic003G355600 Sobic003G355600 Sobic004G162400--Sobic003G355600 Sobic009G126900 Sobic009G126900 Sobic004G162400--Sobic009G126900 Sobic004G162400--Sobic001G015500 Sobic001G273500--Sobic003G316300 Sobic001G273500--Sobic009G000200 Sobic001G273500--Sobic009G079300 Sobic001G273500--Sobic006G149600 Sobic003G332000 Sobic003G332000 Sobic001G273500--Sobic003G332000 Sobic001G273500--Sobic001G298500 Sobic007G025800 Sobic007G025800 Sobic001G273500--Sobic007G025800 Sobic001G273500--Sobic004G162400 Sobic009G200300 Sobic009G200300 Sobic001G273500--Sobic009G200300 Sobic004G225200 Sobic004G225200 Sobic004G071200--Sobic004G225200 Sobic006G091700 Sobic006G091700 Sobic004G071200--Sobic006G091700 Sobic003G398100 Sobic003G398100 Sobic004G071200--Sobic003G398100 Sobic002G420700 Sobic002G420700 Sobic004G071200--Sobic002G420700 Sobic004G071200--Sobic005G178100 Sobic002G266000 Sobic002G266000 Sobic004G071200--Sobic002G266000 Sobic007G035000 Sobic007G035000 Sobic004G071200--Sobic007G035000 Sobic008G153400 Sobic008G153400 Sobic004G071200--Sobic008G153400 Sobic002G085300 Sobic002G085300 Sobic004G071200--Sobic002G085300 Sobic005G231900--Sobic004G162400 Sobic001G488500 Sobic001G488500 Sobic005G231900--Sobic001G488500 Sobic005G079900 Sobic005G079900 Sobic005G231900--Sobic005G079900 Sobic005G231900--Sobic004G101900 Sobic005G231900--Sobic005G216000 Sobic004G236600 Sobic004G236600 Sobic005G231900--Sobic004G236600 Sobic005G231900--Sobic002G304000 Sobic002G322900 Sobic002G322900 Sobic005G231900--Sobic002G322900 Sobic006G271200 Sobic006G271200 Sobic005G231900--Sobic006G271200 Sobic001G069900 Sobic001G069900 Sobic001G015500--Sobic001G069900 Sobic001G325200 Sobic001G325200 Sobic001G015500--Sobic001G325200 Sobic001G015500--Sobic006G091700 Sobic003G087200 Sobic003G087200 Sobic001G015500--Sobic003G087200 Sobic001G015500--Sobic004G101900 Sobic001G015500--Sobic005G178100 Sobic004G124200 Sobic004G124200 Sobic001G015500--Sobic004G124200 Sobic001G150600 Sobic001G150600 Sobic001G015500--Sobic001G150600 Sobic007G186200 Sobic007G186200 Sobic001G015500--Sobic007G186200 Sobic009G079300--Sobic009G000200 Sobic004G236550 Sobic004G236550 Sobic009G079300--Sobic004G236550 Sobic003G126300 Sobic003G126300 Sobic009G079300--Sobic003G126300 Sobic009G079300--Sobic003G316300 Sobic009G079300--Sobic007G025800 Sobic009G079300--Sobic001G180900 Sobic003G272400 Sobic003G272400 Sobic009G079300--Sobic003G272400 Sobic009G136100 Sobic009G136100 Sobic009G079300--Sobic009G136100 Sobic003G367300 Sobic003G367300 Sobic009G079300--Sobic003G367300 Sobic001G298500--Sobic009G000200 Sobic001G298500--Sobic009G079300 Sobic001G298500--Sobic006G271200 Sobic001G350700 Sobic001G350700 Sobic001G298500--Sobic001G350700 Sobic001G298500--Sobic008G189200 Sobic004G004200 Sobic004G004200 Sobic001G298500--Sobic004G004200 Sobic010G107000 Sobic010G107000 Sobic001G298500--Sobic010G107000 Sobic007G092700 Sobic007G092700 Sobic001G298500--Sobic007G092700 Sobic006G125400 Sobic006G125400 Sobic001G298500--Sobic006G125400 Sobic005G178100--Sobic009G161000 Sobic001G305800 Sobic001G305800 Sobic005G178100--Sobic001G305800 Sobic005G178100--Sobic003G087200 Sobic005G178100--Sobic002G420700 Sobic005G178100--Sobic001G015500 Sobic003G105800 Sobic003G105800 Sobic005G178100--Sobic003G105800 Sobic009G034700 Sobic009G034700 Sobic005G178100--Sobic009G034700 Sobic003G184900 Sobic003G184900 Sobic005G178100--Sobic003G184900 Sobic005G178100--Sobic001G150600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.