Gene annotation
Transcriptome id Sobic.006G172300.1
Synonym Sb06g024750
Functional annotation MSP domain containing protein, expressed
UniProt A0A1B6PMF3
Pfam PF00635
Panther DB PTHR10809 PTHR10809:SF54
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT4G00170 : Plant VAMP (vesicle-associated membrane protein) family protein
RAP-DB (Rice) LOC_Os04g46780.1 : MSP domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G399200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
2 Sobic.001G406700 expressed protein -
3 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
4 Sobic.008G164300 - -
5 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.006G209300 transferase family domain containing protein, expressed -
7 Sobic.002G167600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
8 Sobic.005G229100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
9 Sobic.004G163600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.002G205500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@CESA9 - cellulose synthase, expressed K10999: cellulose synthase A
11 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
12 Sobic.009G079100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
13 Sobic.007G223600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
14 Sobic.003G180400 "domain confirmed by Pfam database, expressed in leaf, flower and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
15 Sobic.007G040301 - -
16 Sobic.003G045600 aminotransferase, classes I and II, domain containing protein, expressed -
17 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
18 Sobic.010G131400 rho GDP-dissociation inhibitor 1, putative, expressed K12462: ARHGDI, Rho GDP-dissociation inhibitor
19 Sobic.007G119500 expressed protein -
20 Sobic.008G059800 expressed protein -


Gene co-expression network
sample Sobic006G172300 Sobic006G172300 Sobic001G399200 Sobic001G399200 Sobic006G172300--Sobic001G399200 Sobic001G406700 Sobic001G406700 Sobic006G172300--Sobic001G406700 Sobic006G144600 Sobic006G144600 Sobic006G172300--Sobic006G144600 Sobic008G164300 Sobic008G164300 Sobic006G172300--Sobic008G164300 Sobic010G232500 Sobic010G232500 Sobic006G172300--Sobic010G232500 Sobic006G209300 Sobic006G209300 Sobic006G172300--Sobic006G209300 Sobic002G167600 Sobic002G167600 Sobic006G172300--Sobic002G167600 Sobic005G229100 Sobic005G229100 Sobic006G172300--Sobic005G229100 Sobic004G163600 Sobic004G163600 Sobic006G172300--Sobic004G163600 Sobic001G399200--Sobic001G406700 Sobic001G399200--Sobic006G144600 Sobic001G399200--Sobic010G232500 Sobic003G387500 Sobic003G387500 Sobic001G399200--Sobic003G387500 Sobic001G399200--Sobic005G229100 Sobic001G362100 Sobic001G362100 Sobic001G399200--Sobic001G362100 Sobic007G223600 Sobic007G223600 Sobic001G399200--Sobic007G223600 Sobic006G226200 Sobic006G226200 Sobic001G399200--Sobic006G226200 Sobic009G170500 Sobic009G170500 Sobic001G399200--Sobic009G170500 Sobic001G406700--Sobic003G387500 Sobic001G406700--Sobic006G144600 Sobic001G406700--Sobic001G399200 Sobic001G406700--Sobic009G170500 Sobic001G406700--Sobic010G232500 Sobic001G406700--Sobic002G167600 Sobic001G406700--Sobic005G229100 Sobic007G119500 Sobic007G119500 Sobic001G406700--Sobic007G119500 Sobic009G246700 Sobic009G246700 Sobic001G406700--Sobic009G246700 Sobic006G144600--Sobic001G406700 Sobic006G144600--Sobic010G232500 Sobic006G144600--Sobic003G387500 Sobic006G144600--Sobic002G167600 Sobic006G144600--Sobic009G170500 Sobic006G144600--Sobic001G399200 Sobic006G144600--Sobic005G229100 Sobic006G144600--Sobic007G119500 Sobic006G144600--Sobic007G223600 Sobic004G021400 Sobic004G021400 Sobic008G164300--Sobic004G021400 Sobic008G164300--Sobic006G172300 Sobic010G062400 Sobic010G062400 Sobic008G164300--Sobic010G062400 Sobic004G079700 Sobic004G079700 Sobic008G164300--Sobic004G079700 Sobic002G222600 Sobic002G222600 Sobic008G164300--Sobic002G222600 Sobic009G095800 Sobic009G095800 Sobic008G164300--Sobic009G095800 Sobic008G014700 Sobic008G014700 Sobic008G164300--Sobic008G014700 Sobic002G197000 Sobic002G197000 Sobic008G164300--Sobic002G197000 Sobic010G179900 Sobic010G179900 Sobic008G164300--Sobic010G179900 Sobic010G232500--Sobic006G144600 Sobic010G232500--Sobic001G406700 Sobic010G232500--Sobic005G229100 Sobic010G232500--Sobic003G387500 Sobic010G232500--Sobic006G226200 Sobic010G232500--Sobic002G167600 Sobic010G232500--Sobic001G399200 Sobic003G231500 Sobic003G231500 Sobic010G232500--Sobic003G231500 Sobic010G232500--Sobic007G223600 Sobic006G209300--Sobic003G231500 Sobic002G164600 Sobic002G164600 Sobic006G209300--Sobic002G164600 Sobic003G236701 Sobic003G236701 Sobic006G209300--Sobic003G236701 Sobic006G209300--Sobic006G226200 Sobic006G209300--Sobic010G232500 Sobic006G209300--Sobic007G223600 Sobic006G066500 Sobic006G066500 Sobic006G209300--Sobic006G066500 Sobic003G112200 Sobic003G112200 Sobic006G209300--Sobic003G112200 Sobic008G059800 Sobic008G059800 Sobic006G209300--Sobic008G059800 Sobic001G360700 Sobic001G360700 Sobic002G167600--Sobic001G360700 Sobic002G167600--Sobic006G144600 Sobic004G047600 Sobic004G047600 Sobic002G167600--Sobic004G047600 Sobic002G167600--Sobic001G406700 Sobic002G203900 Sobic002G203900 Sobic002G167600--Sobic002G203900 Sobic002G167600--Sobic009G170500 Sobic002G254900 Sobic002G254900 Sobic002G167600--Sobic002G254900 Sobic001G072600 Sobic001G072600 Sobic002G167600--Sobic001G072600 Sobic010G180100 Sobic010G180100 Sobic002G167600--Sobic010G180100 Sobic005G229100--Sobic007G223600 Sobic005G229100--Sobic010G232500 Sobic002G205500 Sobic002G205500 Sobic005G229100--Sobic002G205500 Sobic005G229100--Sobic006G144600 Sobic005G229100--Sobic001G406700 Sobic005G229100--Sobic002G164600 Sobic005G229100--Sobic006G226200 Sobic005G229100--Sobic003G387500 Sobic005G229100--Sobic001G399200 Sobic002G322300 Sobic002G322300 Sobic004G163600--Sobic002G322300 Sobic004G163600--Sobic002G205500 Sobic003G366300 Sobic003G366300 Sobic004G163600--Sobic003G366300 Sobic003G296400 Sobic003G296400 Sobic004G163600--Sobic003G296400 Sobic004G163600--Sobic007G223600 Sobic001G224300 Sobic001G224300 Sobic004G163600--Sobic001G224300 Sobic009G079100 Sobic009G079100 Sobic004G163600--Sobic009G079100 Sobic004G163600--Sobic001G406700 Sobic009G162500 Sobic009G162500 Sobic004G163600--Sobic009G162500
Octagon: transcription factors


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